LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4056	ATGTGGAGATTTAAGCCATTCATGCATAAAGAGCCAACTGGTCTAGAAGGCCGTTCGATAGATATTGGAAATCTTAAAATAAATGTCCAAAAGGCCATTGCTGAAGGAGGGTTCTCCTGTGTATACTTAGCTCGTGATGCTGTACATATGTCTAAACAATATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATTAAGTCACTGGTAGGACATCCTAATGTCGTCACACTTCTTGCACATACAATCTTTGATATGGGCAGGACAAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAGTCTCTTGTTAATGTGTTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAGCAGGTTTTTGTAATCTTTAGAGATGTATGTAATGCAGTTTTTGCTATGCACTGCCAGTCCCCGCCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCACTTCCACCAATCACAAACGATTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAAAGAAGTAATTAATGAGAAGGTGGACATATGGGCACTTGGATGTCTCCTTTTTCGTATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTTTTAAATGGAAACTACCGCATTCCTGATGTACCTAAATACAGTTCATATGTCACGGACTTGATCAGAGACATGCTTCAAGCTAAACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAGCTACCAACTAATTTACAAAAGTCATTACCTGACAGGCCACCTGAATTGCCTTCTTCCAACAATCACGAAGGTGCATCCATATCCACAAACAAATCATCTCCCATGCCTCGAAGGAATCCACCTCCTCCACCTTCAGTTGTAGAACCCAAAACTACACCTCAGGCATCTCTTGCTTCTAAGGGAGGGGGAAGTAGTGGGCCGCTTGGTGCTTTCTGGTCCACTCAGCATGCAAATGATTCACTTGTTCCTGAGGAAAAGAGTAAACCTATATATGATGAACCATCTAGCCAGCATATGTCATCAAAACATGATAGAGTTCATCTGGAAAATGATCAAGTACCTAAAAAAATTAATACTAACAAAGGGGGTACCACACAAACTCATACTGTAAAAAGCAGTGTACATGGAAAACCTCACAAGCCAGATACCAAATCTTCCAAGGACTTCGAAATAAATTTTTTTCAGGACAAAGATAATGCAAATCAGAGGCGAGTGTCAAATATGGAGAATAATACTAACTTTCAAGACCAGGCTTTTAATACTTTTGTTGCTGAATTTGATACCACTAAGCTCAACTCTGGGCTTGGTAACAAATCTGAAAGGGAAGAAGCATTAGAGGCTGAGGTGGAGAAACTCAGAGAGCAGCTGAAGGAAGCTAACTTGGAGAAAGCTGAAATAACTTCAAAGTATGAAAAGCTTTCTGCTATTTGCAGATCCCAAAGGCAAGAATTGCAGGATCTCAAGCAAGCACTTGCAACAAGGACTCCATCACAGAGTAGAGAGGGTTTAAAAACTTCTCCTGGAATTACCTCATCTCCATCTGAGCTGCAGAGGCAGAAGATTGGTGGGACTGCAGAAAGTGAATTGAAAACTCCTAGTTCAGAACCAAAGTCATGGCAAGCTTTTCCGGAGGAACCTGGACCAGTAAAGTCCCTTTCAGCTGACAATGCTACAAAATCTGTCAGGACAAAAAATGGTCCCCAGAACAAGCAACCTACTCAACTAGCTTCTGACTTTGATTCATGGGGTTTTGGCGCAGATAAGTTCAGTGCTGTACGTGCTGGAAGCCCTCAGATGCCAAGACCTGGTGAAGGGAGTAAAGCTCAGCTTTTTGGTAATCCAAAGGCCTCTGAGAGCAAGTCAGCTTCTCAACCAGCCGGATGGGCAGGCTTTTAG	2064	0.423	MWRFKPFMHKEPTGLEGRSIDIGNLKINVQKAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVIKSLVGHPNVVTLLAHTIFDMGRTKEAFLVMEFCEKSLVNVLESRGAGYFDEKQVFVIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDVPKYSSYVTDLIRDMLQAKPDDRPDITQVWFRVNEQLPTNLQKSLPDRPPELPSSNNHEGASISTNKSSPMPRRNPPPPPSVVEPKTTPQASLASKGGGSSGPLGAFWSTQHANDSLVPEEKSKPIYDEPSSQHMSSKHDRVHLENDQVPKKINTNKGGTTQTHTVKSSVHGKPHKPDTKSSKDFEINFFQDKDNANQRRVSNMENNTNFQDQAFNTFVAEFDTTKLNSGLGNKSEREEALEAEVEKLREQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQALATRTPSQSREGLKTSPGITSSPSELQRQKIGGTAESELKTPSSEPKSWQAFPEEPGPVKSLSADNATKSVRTKNGPQNKQPTQLASDFDSWGFGADKFSAVRAGSPQMPRPGEGSKAQLFGNPKASESKSASQPAGWAGF*	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	300	330	-	-
	Lja3g4056	687	CDD	STKc_GAK_like	26	298	-	-
	Lja3g4056	687	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	547	594	-	-
	Lja3g4056	687	Gene3D	Transferase(Phosphotransferase) domain 1	11	306	-	-
	Lja3g4056	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	331	345	-	-
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	377	410	-	-
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	547	687	-	-
	Lja3g4056	687	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4056	687	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	411	428	-	-
	Lja3g4056	687	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	677	-	-
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	300	442	-	-
	Lja3g4056	687	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	677	-	-
	Lja3g4056	687	Coils	Coil	491	546	-	-
	Lja3g4056	687	MobiDBLite	consensus disorder prediction	609	634	-	-
	Lja3g4056	687	SUPERFAMILY	Protein kinase-like (PK-like)	28	338	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4056	Lja-Chr3	79884072	79887616	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4056	26	292	Miscellaneous Gene Families	AT2G34180	30.249	6.38e-21	94.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Lja3g4056		Pkinase	6.4e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g4056	K08853		-	gmx:100808507	1041.57