Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4052 ATGATTTCTAAGACCTCACTCCCTCTTAAACCTAGCAGCACAAACCAACATCCTGACAAATATAAGAAGGATCGCCACATCAAGGTAAATGGGAGAGAACCTCGAATTACTCTACCACCATTGTGTGCTGCTCGACTGTTCCAACTCACGCATGAGTTGGGACACAAATCTAACGGTGAGACAATTGAGTGGTTGTTACGCCAAGCTGAGCCATCGATCATAGCCGCCACTGGGGTTGGTATATCACCATCTTCCATGAGCACTTCATTCTCGGCTAATGTTGCATCTACATCAATATCATTTGTTAATGCTAATTCTCATGAACCAGCTTGA 333 0.4414 MISKTSLPLKPSSTNQHPDKYKKDRHIKVNGREPRITLPPLCAARLFQLTHELGHKSNGETIEWLLRQAEPSIIAATGVGISPSSMSTSFSANVASTSISFVNANSHEPA* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4052 110 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 18 102 - -
Lja3g4052 110 MobiDBLite consensus disorder prediction 1 15 - -
Lja3g4052 110 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g4052 110 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 102 IPR005333 GO:0003700
Lja3g4052 110 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Lja3g4052 110 Pfam TCP family transcription factor 22 101 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4052 Lja-Chr3 79852098 79852430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4052 23 89 TCP Transcription Factor Family AT5G23280 73.134 8.21e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja3g4052 TCP 4.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4052 - K16221 var:108322003 123.635