Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4050 ATGGTTAAACCATCATCATATATTTTTTTGTTTCTCATATCACTCACATATCATATGGAAAACAACCAAAACCACAACCCACACCCAAACCTAGACAACCACCACCACCCTTGGGGCACGAAGGAAGACCTCTTGCTAGCCTTCGCCGTCGAACGCCATGGCTTCAACGACTGGGACAACGTCGCCATGGAGCTCCAGTCCCGCATCAACCGCCGCCTCTTCACCGCACACCACTGCCAGGAGCGGTTTCACGATCTCGACCGCCGATTCGGTGACCAATGCAACGGCGCCGCCGCCTCCGATCACGTCGTCCCCTGGCGTGAAGAAGTGCGGAAGCTCCGCTGCGCCGAGCTCCGGCGTGATGTCCAGCGCCACGACGTCAACATTCAATCGTGGGAGAAAGAGGTGAAGAGGTTACAGGAATTGAAAGAGAAGGAGAAGAACGCGAAGGAGGATGAAAAACCAGATCCGGCGGTTTCCGGCGAGAAGCGGCTGCCGGTAAACGACAAAGGCGGAGAACAAGAAGTGGCTGGACCGGTGAATTCCGAACCGGAGGATAAGCTGCTACCAACAGCGGGTGAGGAATCGGACCGGGAGAACCAGTCGGTTAACGAGTCCAACTCGACCGATTCGAGGTTTGAGGTGGCGAAAACCGGGGAAGGTGACGTGAAATTAGGACCTGGACCGGCTCCGGTTCAATCCGGTCCAAACGAACCGGATCCGGTTACGCGGAAGAGAAAACCGGTTGGGGAAGAATCGAATAACGGAAGCTATGATACCGAGGCTAAGGTTCCGACGTGTGAGTCGGTGCCTCCGAGTGAGGAGAGGAAGGCGGCGGCGGAGGAGGGATCGTCGGAGTTGAATGACTCGGTGGCGGCTCACTCGGGAGATGGAGGAGGGACGAGGGAGAGCAGCGATGTGCAGAGCTCGGCGAGCTTGACGAGGAGGAGGAAGACGCAGCGGCGGAAGGAGGTTTCCGGCGGCGGCGAGGTGGCGATGGTGAAATCTGAGCCGTTGGTTGGCGTGTGGGAGCTGATCAAAGGACATGAGAACATTTCATTGTTCGAGCGCCGTCTTGAAAACCAGGAGGACTCGGATAGGTACAAAGAAACGGTGAGACAGCATGTAGACTTGGAAACCATACAACTGAGACTTCAAAAGGGTTCCTATTCCTCGTGCACCAGCGCATTCTTTCGGGACCTTCTCCTTCTCTTCACCAACGCCACCGTGTTCTTCCCTGAAGGCTCCACTGAATCGCGGGCGGCGCAGCAGCTGCACCACATTGTCATCTCTGAGATGAGAAGCCATGGCCAGTCGCAATCCGACCCTTCACCCCAGAAGAGTGATTCACTCCCTCCAAACGCACCACCGGCCAAACCAGATTCTCTCCTCTCCAAGCACCAAGCTTCTGCTCCTATTTTAGTTTGCCGCAAGCGAAGTTCAATCTCAGCCAAAGCTTCCCCAGCAACCTCTGGCCAGAAGAGTGACACCCAAACCATCGCCAATGACAAGAAGGAAAAGCCACCTTCTGATGCAAAACCACCCTTAAAACCTTCTAATTCCGAGACAGACGAGGAGGAGGCTCCCAAGACCAAGGAAAAGCCCGTCACCACCGGAGCGAGAAGCCTGAGGAGAAGCAACAAGAATCTCAACACCAACACTAGCAATAAGAAACCTTCTTCTAACTCCACCACTAAAGGAGGGTCCTCGACGAGCAAGTCTACCGAGACCTTGAAATTGGAGAAGAGCAAAGCAGAGCCGGTGCCTGAAAAGAAGAGGAACGCTGCCGCTGATTTCCTGAAACGTATTAAGCGAAACACTTCAGTGGAGGCGCTGAAGAGTGGTGCAGCAGCAGGAGGAGGAAGTAACAGCAGCAGCAAGGGTGGTGGTGGAGGTGTGAAAGAGCAGAAGAAACCGGTGAATAGTGCAAAGGGGGATAAAGGAAAAGAAAAGGCTTCAAGGAATAACAATGAAGGAGGGCCAGGGTCAGGAGATAAAAGGAGTAAGAATACTGCTGAGAACTCGAAGAGGAGTGTTGGGAGACCTCCAAAGAAGGCAGCTGAGACCACTCCTGTTAGTGCAAAGCGTGGGAGAGAAAGTGGTGCTAGTGGGGGGAAAGATAAGCGACCCAAGAAACGTTCTAAGAAATGA 2151 0.5407 MVKPSSYIFLFLISLTYHMENNQNHNPHPNLDNHHHPWGTKEDLLLAFAVERHGFNDWDNVAMELQSRINRRLFTAHHCQERFHDLDRRFGDQCNGAAASDHVVPWREEVRKLRCAELRRDVQRHDVNIQSWEKEVKRLQELKEKEKNAKEDEKPDPAVSGEKRLPVNDKGGEQEVAGPVNSEPEDKLLPTAGEESDRENQSVNESNSTDSRFEVAKTGEGDVKLGPGPAPVQSGPNEPDPVTRKRKPVGEESNNGSYDTEAKVPTCESVPPSEERKAAAEEGSSELNDSVAAHSGDGGGTRESSDVQSSASLTRRRKTQRRKEVSGGGEVAMVKSEPLVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSSCTSAFFRDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMRSHGQSQSDPSPQKSDSLPPNAPPAKPDSLLSKHQASAPILVCRKRSSISAKASPATSGQKSDTQTIANDKKEKPPSDAKPPLKPSNSETDEEEAPKTKEKPVTTGARSLRRSNKNLNTNTSNKKPSSNSTTKGGSSTSKSTETLKLEKSKAEPVPEKKRNAAADFLKRIKRNTSVEALKSGAAAGGGSNSSSKGGGGGVKEQKKPVNSAKGDKGKEKASRNNNEGGPGSGDKRSKNTAENSKRSVGRPPKKAAETTPVSAKRGRESGASGGKDKRPKKRSKK* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4050 716 MobiDBLite consensus disorder prediction 144 330 - -
Lja3g4050 716 MobiDBLite consensus disorder prediction 577 601 - -
Lja3g4050 716 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Lja3g4050 716 Pfam Bromodomain 342 423 IPR001487 GO:0005515
Lja3g4050 716 CDD Bromodomain 349 433 - -
Lja3g4050 716 PANTHER BNAC04G22430D PROTEIN 24 716 - -
Lja3g4050 716 Coils Coil 115 152 - -
Lja3g4050 716 Gene3D - 30 86 - -
Lja3g4050 716 MobiDBLite consensus disorder prediction 540 576 - -
Lja3g4050 716 ProSiteProfiles Bromodomain profile. 347 419 IPR001487 GO:0005515
Lja3g4050 716 MobiDBLite consensus disorder prediction 482 601 - -
Lja3g4050 716 SMART sant 34 89 IPR001005 -
Lja3g4050 716 SMART bromo_6 99 438 IPR001487 GO:0005515
Lja3g4050 716 SUPERFAMILY Homeodomain-like 30 86 IPR009057 -
Lja3g4050 716 MobiDBLite consensus disorder prediction 144 160 - -
Lja3g4050 716 SUPERFAMILY Bromodomain 338 436 IPR036427 GO:0005515
Lja3g4050 716 MobiDBLite consensus disorder prediction 669 683 - -
Lja3g4050 716 MobiDBLite consensus disorder prediction 613 716 - -
Lja3g4050 716 CDD SANT 37 86 IPR001005 -
Lja3g4050 716 MobiDBLite consensus disorder prediction 433 466 - -
Lja3g4050 716 MobiDBLite consensus disorder prediction 483 498 - -
Lja3g4050 716 Gene3D - 331 443 IPR036427 GO:0005515
Lja3g4050 716 ProSiteProfiles Myb-like domain profile. 37 87 IPR001005 -
Lja3g4050 716 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 24 716 - -
Lja3g4050 716 MobiDBLite consensus disorder prediction 639 654 - -
Lja3g4050 716 MobiDBLite consensus disorder prediction 499 539 - -
Lja3g4050 716 MobiDBLite consensus disorder prediction 433 448 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g4050 Bromodomain 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4050 - - gmx:100779988 789.645