Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4046 ATGGAGCTTGGTCTGAGATTAGGAGACTCTTCAACTTCAAACCTTGGTGAAGCTTCCAATAATCAACTGGATTTAGGCTTCAACACCACCTTATCAATTGGTCCAATCACAACTTCACACAAACAAGAAGAAACTAAGCCCAAAAAGGACAATAACAACAACAGTCAGAGAAATCAAGATCACCATGAAGAAACAAGTCAGGCAAACAACAACCCTGTCCCCCAACAGCTTGATCTTCTTCCTCTTCTCTCCTTTCCATGGCATCCAGCTTCTGAAAATGGGACTTTATCAGCTGAGTTGGGGGGCTCTGGAAGGACCATGAACGTGCTGCCTGCGGCGGCGGTGGTGGAGGATGAGGCGGAGGAAGGGGCGGCGCTGTCATCATCGCCTAACAGCGCAGCGTCTTCATTTCAGATGGATCTGTGCATGTACAGCAGAGGAGGTAGTGGTGGCGGTGGTGGTGGGAGTTTCAGTGGTTCAGGTGGGAAGAGGGACTCTGATGGTGAGGCTTATGATGAAGATGAAAACGGTGGGGGTGGTGGTGGAAATAGCACCAGGAAGAAGCTTAGGCTCTCTAAGGAACAATCTGCTTTCCTTGAAGAGAGTTTCAAAGAACACCACACTCTTAACCCTAAACAAAAACTTGCCCTTTCAAAACAACTCAATCTACGCCCTCGACAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAGCTGAAGCAGACAGAAGTGGACTGTGAATATTTGAAGAGGTGTTGTGAGACACTGACAGAGGAGAATAGAAGGCTTCACAAAGAGCTTCAAGAATTGAGGGCTTTGAAGAAATCAAACCCATTCTACATGCAATTACCAGCCACCACCTTGACCATGTGCCCATCTTGTGAACGTGTCGCCACAAATCCAACATCGAATGGCACCAATAATGTTAATACTAATAACAATAATACCTCAGCCACAGCCAATAATACCAGCAATGACTCCAATTCCAAAGCCATTGGATTCCCATTTGGCAGCAAACCCAGGTTTCTTCCATTTGCTCACACCAGTCCACAGCATCTTGAATTGAATTGA 1077 0.4624 MELGLRLGDSSTSNLGEASNNQLDLGFNTTLSIGPITTSHKQEETKPKKDNNNNSQRNQDHHEETSQANNNPVPQQLDLLPLLSFPWHPASENGTLSAELGGSGRTMNVLPAAAVVEDEAEEGAALSSSPNSAASSFQMDLCMYSRGGSGGGGGGSFSGSGGKRDSDGEAYDEDENGGGGGGNSTRKKLRLSKEQSAFLEESFKEHHTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKKSNPFYMQLPATTLTMCPSCERVATNPTSNGTNNVNTNNNNTSATANNTSNDSNSKAIGFPFGSKPRFLPFAHTSPQHLELN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4046 358 MobiDBLite consensus disorder prediction 149 190 - -
Lja3g4046 358 CDD homeodomain 186 243 IPR001356 GO:0003677
Lja3g4046 358 Coils Coil 255 278 - -
Lja3g4046 358 Gene3D - 180 247 - -
Lja3g4046 358 ProSiteProfiles 'Homeobox' domain profile. 182 242 IPR001356 GO:0003677
Lja3g4046 358 MobiDBLite consensus disorder prediction 301 334 - -
Lja3g4046 358 ProSitePatterns 'Homeobox' domain signature. 217 240 IPR017970 GO:0000981|GO:0006355
Lja3g4046 358 PANTHER PROTEIN, PUTATIVE-RELATED 72 354 - -
Lja3g4046 358 MobiDBLite consensus disorder prediction 1 74 - -
Lja3g4046 358 SUPERFAMILY Homeodomain-like 171 243 IPR009057 -
Lja3g4046 358 SMART halz 242 285 IPR003106 GO:0006355|GO:0043565
Lja3g4046 358 Pfam Homeodomain 186 240 IPR001356 GO:0003677
Lja3g4046 358 MobiDBLite consensus disorder prediction 7 40 - -
Lja3g4046 358 PANTHER - 72 354 - -
Lja3g4046 358 MobiDBLite consensus disorder prediction 41 64 - -
Lja3g4046 358 Pfam Homeobox associated leucine zipper 242 276 IPR003106 GO:0006355|GO:0043565
Lja3g4046 358 MobiDBLite consensus disorder prediction 301 335 - -
Lja3g4046 358 SMART HOX_1 184 246 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4046 Lja-Chr3 79716718 79719063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4046 104 298 Homeobox Transcription Factor Family AT3G60390 59.512 3.19e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g4046 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4046 K09338 - gmx:100778742 404.445