Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4045 ATGGATCAGCAGCCTTTGTACCCGATTCAAGAGCGCCTCAGGATCCTTGAAGGAGTTGTCTTCAGGGATAGGCAGCGGCAGAGGCGGCGAGAGGGTGAAACTCCAATTCAGATAACTACCTCTACCGGAGAATCGGTTACAGTAGATAGTGATGTTCAAGATGAAGGCAGGGTGCACCGGGAAGAAGTTGGTAGTGATGTTGAAAAGGCGGCGCGCGAAGGTTGGGACCTGCGCAAAAGGAAAAGTGCCTATTTAGTTGCTAAAGCATTGGGGTTGGAAACATACACCGATGAGGCAGAGGGATTTAGTGGAAGCTTTTACGATTGTAATATATGCTTGGAAATGGCAAGAGATCCTGTTTTGACCTGCTGTGGTCATTTGTTTTGCTGGCCATGCTTCTATAGGTTGTCATATGCTTATTCTGTTGCAAAGGAATGCCCTGTCTGTAAAGGAGAGGTCACTGAAGCCAGCATTATCCCAATTTATGGCAGTGCAAGTGTCGATTGTATTGATAAGTTGGGATCGGAAGGAGATGCTTTGATAGTTCCTGATCGACCCCATGCATCGAGAATTGAGAGTATTAGGCAGCAATGCAGAAGCCCAACAGCTACTCCAATCCATGAAATGATGATTAGTTACTTGTTACATAACTTAGCTTCATTTGAAGAGCAATTTCAATTCGAAACCCCTGGTGCTACAACCAGTAGACCTAACGATTTGGCTGCTCAATCTCGCCAGGAGGCAGAAAATAGTCAGCATACTTCTTCCTATCAATTTTCAACGTTGCCATTGCACGAAGATGCTTCACTTTCATATGATTTGGCAATTGATCATTTAGATATTCTCTTTCGTGAATTCGAATCATTCCATATGAGATTGGTTTCTGACAATAGAGGCTCACCTTTTAGCATTGTTGCTATATCAGGGCGTCCTAATGGAGATGTTGCTGCAACCAATTCTGCAACCCCTTCTTTTGTTTCTCCCATAAGTAGCGAGGATGACTTTAATGCTGTTTCGGACACTGATATCCACACAACCAATAGTAGTACACAGACAATTTCTGCATACCCACCATCTTCTACTGGAACAGATCTTTGA 1098 0.439 MDQQPLYPIQERLRILEGVVFRDRQRQRRREGETPIQITTSTGESVTVDSDVQDEGRVHREEVGSDVEKAAREGWDLRKRKSAYLVAKALGLETYTDEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEASIIPIYGSASVDCIDKLGSEGDALIVPDRPHASRIESIRQQCRSPTATPIHEMMISYLLHNLASFEEQFQFETPGATTSRPNDLAAQSRQEAENSQHTSSYQFSTLPLHEDASLSYDLAIDHLDILFREFESFHMRLVSDNRGSPFSIVAISGRPNGDVAATNSATPSFVSPISSEDDFNAVSDTDIHTTNSSTQTISAYPPSSTGTDL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4045 365 Pfam zinc-RING finger domain 109 150 IPR001841 -
Lja3g4045 365 MobiDBLite consensus disorder prediction 34 49 - -
Lja3g4045 365 MobiDBLite consensus disorder prediction 346 365 - -
Lja3g4045 365 MobiDBLite consensus disorder prediction 229 257 - -
Lja3g4045 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 254 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja3g4045 365 MobiDBLite consensus disorder prediction 26 49 - -
Lja3g4045 365 CDD RING-HC_AtRMA_like 107 151 - -
Lja3g4045 365 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 254 - -
Lja3g4045 365 SMART ring_2 109 149 IPR001841 -
Lja3g4045 365 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Lja3g4045 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 224 IPR013083 -
Lja3g4045 365 SUPERFAMILY RING/U-box 107 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4045 Lja-Chr3 79688135 79690003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4045 63 210 C3H Transcription Factor Family AT3G58030 42.138 2.68e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4045 K10666 - gmx:100793230 234.187