Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4035 ATGGCTGATGACGACGGTTCCCGGAAGCGAAGGCCCACCAGAGGCCCCGAATCCACCGCCCGCAGCCAAGCCTTAGAGCGCCTCAAGGCCCGCCTTGGCGGCGGCCGCAGATCTGACCCCGCCGGACCCCAAATCAAGTTAGAAAACCCTATCTACGACACCGTCCCCGAAGACGAGTACAACGCTCTCGTCGCGAAGCGCCGCGAGCAAGCGCAGGATTTCATCGTCGACGATGACGGCCTCGGGTACGGGGATCAAGGTCAGGAAGAGGATTGGTCCAAAGCAGGCTACACTCTCTCATCCGGAGACGAATCCGATGGCGGTGGCGAGAAGGCGGAAAAGCCGAAGCGGAAGAAGGATCCTCAGATCAAACGGCCTTCTGCTTCTTCAGTGTCACTCTCCGCCGCCGCAGCTATGATCGGCGCGCAGAGGCTGTCGTCGATGTTCACTTCCTCGAATTTCAAGAAGAATAGGGATGAGAAGGCTAGTGAGAGCATTGTTGATGATGTTATTGCGGAGTTTGCACCGGATGAGAATGATAGGCTGAGGCGAAGAAAGGCGCAACCGAATCCGTCGGCATACTCTCCCGGAGAATCTCTTAGGGTTAAGCCATGTACTACTAATTCAATTAGGGCTTCTCCGGTGTCTGGTAATTTCTCAATTGACGGCGGCACCGCGAAACCGGTTAGGGCTAATGAGAGCAATGGTAGTGAATTGGGGGTAGAGCTAAAGTTTGAAGAAGCAGCTGAACTGAATGGAAATTCTGAAAATGTTCAGGCGCAGCCGGAAACGATGCAAATTGATGATTTTCCCAGTAATGAGGGTTTGAGTGAGGATAAAGTGGTGAAGGACATTGAGATGGAAGAAAAACCAGCTCTGAAAAAAGAGGTTTTCACTTTGAATGCGAAAATTTCAAGAGAGGAGGATCCGACATTGAGTGCTGCTACCGCGGGTTGGCAGGCAGCAAAGAGGAGTACCGGCGGAGGAGGGGAGATCAATGGTGCTGTTTCGAAGGATGGTTTGTCCGCCGAGTTTAATTTGGAGGCAGATGGATCGCTGCCATTTTTCATACTAGATGCCCATGAGGAGTATTATGGAGCCAATATGGGAACGGTTTATTTGTTCGGGAAGGTGAAAACAGGGGATTTGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGATGTGTCTATGCAATTCCAAGTCGTCCTTTGCATTACACTGATGAGATAATGAATCTTGAGAAAGATGTCCAGGAGTCTCGAATTTCTCCTGCAGATTTCCATAAAAAACTGCAAGGTTCTGTATCTGATATAAAGAATGAGATAGCAAAACATCTGGTGGATCTGAATGTTTCTTCCTTTACCATGGCGCCGGTTAAGAGAAAATATGCATTTGAACGAACTGAAATTCCGGCTGGTGATAATTATGTTGTGAAAATAAATTATCCATTTAAGGATTCAGTACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTTCTAGGAACTCATTGCAGCGCACTCGAGCTTTTTTTGATTAAAAGGAAGATAAAAGGGCCTTCATGGCTACAGGTTTCAAAATTTTCTACATGTTCAGCTTCTCAAAGGTTTAGCTGGTGCAAATTTGAATTGACTGTTGACTCTCCTAAAGACATAAGGATTTCTTCACCTTCCTTGAAAATCACTTGCGAGATGCCTCCTGTTGTTGTCACAGCGATAAACTTGAAAACCATCCTAAATGAAGAGCAGAACATAAATGAAATTGTATCTGCATCTGTTGTCTGTTGCAATATGGTCAAGATCGACACTCCTATGTTGGCTTCAGAGTGGAAAAGACCTGGAAAGCTGACCCATTTTACTGTTATTCGTAAACTTCATGGGAATATATTTCCTCTGGGATTCAATAAGGAGGTTACAGACAGAAACACAAAAGCGGGGTCAAATATTGTGTGTGCTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTGATGTTAGAATTACACAAGTTGGATACTGATGTCCTTGTTGGACATAATATTTCTGGATTCGACCTGGATGTCCTTCTCCACAGATCCCAGGCTTGCAAAGTACCGAGCAGCATGTGGTCTAAACTAGGCCGTCTCAACCGTTCTACGATGCCTAAACTTGACAGGAGGAAGAAAACTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCTTGTATTGCTGGTCGACTTCTTTGTGATACATATCTGAGTTCCCGTGATCTATTAAAGGAGGTTAGTTATTCCTTAACTGAGCTTGCAAAAACACAGCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGGAATTCCAAAAATGTTCCAAACTGCAGAGTCCCTAATGGAGCTTATTGAATATGGTGAAACGGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTATTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGTGCACAAAGAGTGGAGTATCTTTTGTTGCATGCCTTCCATGCAAAGAAATACATTGTGCCAGACAAGTTTTCAAATTACGCAAAAGAAACAAAATTGACAAAACGCAGAGTAACTCATGGTGTTGATGATGGCAACATTGATGAAGCAGATATTGATGATGGAAACTACCATAACAATGCCTCCGAAATTGATCATAAGAAAAGCAAGAAGGCTTCTTCCTATGCCGGGGGACTGGTTTTAGAGCCAAAGAAGGGTCTTTATGACAAATATATATTGCTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTTTGATGGATCTTTTCCTCGTCTACCTTCTAGTACAATAACTGGAATCTTGCCAGAGTTGCTGGAAAATCTAGTTAAAAGGAGGAAAAGCGTAAAGACATGGATGAAGACTGCATCTGGTCTTAAATATCAGCAATTTGATATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAGCCAATAGCTGAGCTCATAACCCTACAAGGAAGGGAGATATTGCAGAGTACTGTTGACCTTGTTCAAAATAATTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGTGAAAGCAAAGGCAATGGCTGGAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTCCTTCTTAAGAAAAAGAAATATGCTGCTGTGAAGGTGCAGTTTAAAGATGGTAGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTGGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGTGAAGATGTGGTTGAATCGATTCACAGCTCTCTCATGAAGGTGCAAGAGGAGATGAGGAACGGTCAAGTACCATTGGAAAAATATGTGATCACAAAGACATTGACTAAAGATCCTGAAGCTTATCCTGATGCCAAAAACCAACCACATGTTCTTGTGGCACAAAGATTGAAGCAGCAAGGTTACTCCTCTGGTTGCTCTGTTGGTGATACCATCCCTTATATAATTTGCTATGAGCAGGGTGGTAGTTCAGGCAGTGCAAAGGGTATTGCTCAACGTGCCAGACATCCTGACGAACTAAAACAAGAAAAGGGGACATGGCTAATTGACATTGATTACTATTTATCACAACAGATTCATCCTGTGGTATCACGTCTCTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCTTCAAGTGTTGATCCTACAAGCTCACTCATGTTTGCTGCTGATGACGAGGAGAGGTATCAGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACTATTGACTGCCCACCTGTGTTTAAATCCGTTTGTTTGTCGGTGAATGAAAAGCCATCTAGCTCGGGCACGGAGGAATCTGACTACAATTTTTGGCGTAAGCTGTGCTGTCCTAAATGCCAAGAAAATGGTGTTGGTAGAATTTCTCCTGCAATGATAGCCAATCAGGTCAAAATGCAAGCAGAGAAGTTCGTTTTAATGTATTATAGAGGTTCATTAATGTGCGATGACGAGACGTGTAAGCACACAACGCGAAGTATCAGCCTTCGGCTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAACGGGCGTCTCTACAGAAAGTACACTGAAGCAGACTTGTACAAGCAACTCTCATATTTCTGCCATGTATTCGATACTGCTAGTTGTATAGAAAAGTTGGAGGAAAAATCTAGGATACCAGTAGAGAAAGAGTTGATCAAAATTAGGCCAATAGTTGACCCAGTAGCATCAACAGTACAGAAGATGAGGGACCGTTGTGCCTATGGTTGGGTGAAGCTGGAGGACTTGGTCATTTCAATTTAA 4623 0.4361 MADDDGSRKRRPTRGPESTARSQALERLKARLGGGRRSDPAGPQIKLENPIYDTVPEDEYNALVAKRREQAQDFIVDDDGLGYGDQGQEEDWSKAGYTLSSGDESDGGGEKAEKPKRKKDPQIKRPSASSVSLSAAAAMIGAQRLSSMFTSSNFKKNRDEKASESIVDDVIAEFAPDENDRLRRRKAQPNPSAYSPGESLRVKPCTTNSIRASPVSGNFSIDGGTAKPVRANESNGSELGVELKFEEAAELNGNSENVQAQPETMQIDDFPSNEGLSEDKVVKDIEMEEKPALKKEVFTLNAKISREEDPTLSAATAGWQAAKRSTGGGGEINGAVSKDGLSAEFNLEADGSLPFFILDAHEEYYGANMGTVYLFGKVKTGDLYQSCCVVVKNMQRCVYAIPSRPLHYTDEIMNLEKDVQESRISPADFHKKLQGSVSDIKNEIAKHLVDLNVSSFTMAPVKRKYAFERTEIPAGDNYVVKINYPFKDSVLPVDLKGESFCALLGTHCSALELFLIKRKIKGPSWLQVSKFSTCSASQRFSWCKFELTVDSPKDIRISSPSLKITCEMPPVVVTAINLKTILNEEQNINEIVSASVVCCNMVKIDTPMLASEWKRPGKLTHFTVIRKLHGNIFPLGFNKEVTDRNTKAGSNIVCAESSERALLNRLMLELHKLDTDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRKKTFGSGADPGIMSCIAGRLLCDTYLSSRDLLKEVSYSLTELAKTQLNKFRKEVAPHGIPKMFQTAESLMELIEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFSNYAKETKLTKRRVTHGVDDGNIDEADIDDGNYHNNASEIDHKKSKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSFDGSFPRLPSSTITGILPELLENLVKRRKSVKTWMKTASGLKYQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIVKAKAMAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGSTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKVQEEMRNGQVPLEKYVITKTLTKDPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAKGIAQRARHPDELKQEKGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEASSVDPTSSLMFAADDEERYQGCEPLVLSCPSCSGTIDCPPVFKSVCLSVNEKPSSSGTEESDYNFWRKLCCPKCQENGVGRISPAMIANQVKMQAEKFVLMYYRGSLMCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLYRKYTEADLYKQLSYFCHVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDRCAYGWVKLEDLVISI* 1541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4035 1540 MobiDBLite consensus disorder prediction 176 204 - -
Lja3g4035 1540 Pfam DNA polymerase family B 828 1292 IPR006134 GO:0000166|GO:0003677
Lja3g4035 1540 CDD POLBc_alpha 903 1308 IPR045846 GO:0003887|GO:1902975
Lja3g4035 1540 Gene3D - 395 521 - -
Lja3g4035 1540 Gene3D Palm domain of DNA polymerase 910 1115 IPR023211 -
Lja3g4035 1540 Gene3D Helix hairpin bin 969 1020 - -
Lja3g4035 1540 Coils Coil 1085 1105 - -
Lja3g4035 1540 Gene3D - 1136 1321 IPR042087 -
Lja3g4035 1540 SMART polmehr3 569 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja3g4035 1540 PRINTS DNA-directed DNA-polymerase family B signature 928 941 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja3g4035 1540 PRINTS DNA-directed DNA-polymerase family B signature 1057 1065 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja3g4035 1540 PRINTS DNA-directed DNA-polymerase family B signature 1004 1016 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja3g4035 1540 MobiDBLite consensus disorder prediction 77 135 - -
Lja3g4035 1540 TIGRFAM pol2: DNA polymerase (pol2) 50 1290 - -
Lja3g4035 1540 ProSitePatterns DNA polymerase family B signature. 1059 1067 IPR017964 GO:0000166|GO:0003676
Lja3g4035 1540 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Lja3g4035 1540 SUPERFAMILY DNA/RNA polymerases 853 1307 IPR043502 -
Lja3g4035 1540 CDD DNA_polB_alpha_exo 569 820 - -
Lja3g4035 1540 MobiDBLite consensus disorder prediction 1 16 - -
Lja3g4035 1540 MobiDBLite consensus disorder prediction 106 124 - -
Lja3g4035 1540 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 325 1538 - -
Lja3g4035 1540 Gene3D - 569 882 IPR036397 GO:0003676
Lja3g4035 1540 Gene3D DNA Polymerase alpha, zinc finger 1331 1526 IPR038256 -
Lja3g4035 1540 Pfam DNA polymerase family B, exonuclease domain 385 763 IPR006133 -
Lja3g4035 1540 SUPERFAMILY Ribonuclease H-like 350 857 IPR012337 -
Lja3g4035 1540 MobiDBLite consensus disorder prediction 1 53 - -
Lja3g4035 1540 Pfam DNA Polymerase alpha zinc finger 1332 1536 IPR015088 GO:0003887|GO:0006260
Lja3g4035 1540 PANTHER DNA POLYMERASE 325 1538 - -
Lja3g4035 1540 Gene3D - 355 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4035 Lja-Chr3 79555919 79568757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4035 2 1538 Core DNA Replication Machinery Family AT5G67100 61.129 0.0 1852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4035 K02320 - gmx:100798779 2272.66