Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4033 ATGTCCACGGCGGAGCCAGATTCAAAAACCTACTGGTGCCACGAATGCGACATGAGCGTCTCCCTCACTCCCTCTCCCTCTCCTTCCCCCCTCTCCTGCCCGCACTGCCACACCAACTTCCTCGAACTCATGGACTCCCCCTCCGCCCAAAACGACGCCCCCTCCGCCCTCTTCGACGTCGTTTTCCAAGACGCACTCGCACTATTCTCCCCCACTCCCGCCACCACCACTCGCCGCGCCGTCCCCGTGATCGCCGCCACGCACGCTCTCCTCTCCTGCCTCGACCCCACCGGCGTTGTACACTGCGCCGTGTGTAAAGACCAGATCGCGGTCGACGCGGAGGCTAAGCAGTTGCCCTGCGAGCATCTCTACCACTCCGATTGCATCACGCCGTGGCTTGAGCTTCGTGGCTCGTGCCCGCTCTGCCGGTTTTGTCTTGAAGAGGATGCGGTGGAGGAAGAGGAGAATGACGGTGGTGATGTTGCTGTTAGGAGGGAGTTGATGGTGAGGTTGTTGGAGTTGACGGAGGAGGATTTCTACGGGTTGAGGACTACGCTTAACCACATTGTTAACCGGCACGCTTTTCTTCTGGAATCCGATGATGGTTCTCGAGAGGCCGCGAATCGTGAAGCTCGCGGTGGTGGTGGTGGTGGAGGTGGAGAATCTGGATCCTGA 675 0.5985 MSTAEPDSKTYWCHECDMSVSLTPSPSPSPLSCPHCHTNFLELMDSPSAQNDAPSALFDVVFQDALALFSPTPATTTRRAVPVIAATHALLSCLDPTGVVHCAVCKDQIAVDAEAKQLPCEHLYHSDCITPWLELRGSCPLCRFCLEEDAVEEEENDGGDVAVRRELMVRLLELTEEDFYGLRTTLNHIVNRHAFLLESDDGSREAANREARGGGGGGGGESGS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4033 224 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 49 - -
Lja3g4033 224 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 69 156 - -
Lja3g4033 224 Pfam Ring finger domain 101 143 IPR001841 -
Lja3g4033 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 161 IPR013083 -
Lja3g4033 224 Pfam zinc-ribbon 10 44 IPR039525 GO:0061630
Lja3g4033 224 ProSiteProfiles Zinc finger RING-type profile. 102 143 IPR001841 -
Lja3g4033 224 MobiDBLite consensus disorder prediction 201 224 - -
Lja3g4033 224 SMART ring_2 102 142 IPR001841 -
Lja3g4033 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 49 - -
Lja3g4033 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 156 - -
Lja3g4033 224 SUPERFAMILY RING/U-box 101 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4033 Lja-Chr3 79481542 79484685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4033 4 182 C3H Transcription Factor Family AT3G60080 32.400 1.50e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4033 K11982 - gmx:100782164 240.736