Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4032 ATGGAGATATTGTCACAAATGTGGTCATTGTTAGGGTTACTCACAGTGCTCCAAAATGTGCTCCCATCACAGCTTCTCTCAGTGCTTCATTCTCTGTATGAATCCCTACAAGACTTGCTCTCTCCATACTCCTACTTCGAGATTCCGGAGTTCAACGGCTACTGCGGCGTCGAGCTCAACGACCTCTACCGCCACGTCCACCTCTACCTCAACGCCGTGAACCACTCCCCTGCCGCCACATGCCGCCGACTAACCCTCTCCCGCTCCCCATCATCAAAACGCATCTCATTCGCCGTCGCGCCAAACCACACCGTCAACGACACCTTCGGCGGCCATCGCCTGTCCTGGACCCACCAAGTCGACACCGTGCAGGACTCCCTCGAGGAGCGACGGAGCTTCACCCTAAGATTCCCGAAGCGCCACCGCCACGCTCTCCTCTCCCCTTACCTCACCCACGTCACTGCCCGCGCCGAGGAGTTCGAGCGCGTCTCGCGCGAGCGCAGGCTCTTCACCAACAACAATGGTTCCGGCTCGTTCGAATCCGGTTGGGTCTCCGTCCCGTTCCGCCACCCCTCCACATTCGAAACCCTAGCTCTGGAACCAGATCTGAAAAAACGAATCAAAACCGACCTCACCAATTTCTCCACCGGCAGGGAATTCTACCACCGCGTCGGCCGAGCTTGGAAGCGCGGCTACCTCCTCCACGGCCCTCCCGGTTCGGGTAAATCAAGCCTCATCGCCGCCATGGCGAATTTCCTCTGCTACGACGTCTACGACCTAGAACTCACAAAAGTCACCGACAACTCCGAGCTCCGATCACTCCTGATCCAAACAACGAGCCGTTCGATCATCGTGATCGAAGACATCGATTGCTCCGTCGATCTAACCGCAGATCGATCCCTAAAGAAAACTACAGGATCAAAATCGTCGTCGAGAACGAGAAAGGAGAGCAACAAAACGGCGTCGTGCGGCGATGAAACGGGTCGGGTCACGCTTTCGGGGCTGTTAAACTTCACCGACGGGTTATGGTCATGCTGCGGGGAGGAGAGGCTGGTGGTGTTCACGACGAACCACCGGGAGAGCATCGACCCGGCGCTGGTCCGGTGCGGGCGGATGGACGTGCACGTGAGCCTCGGCACGTGCGGGGTTCACGCGTTCCGGGAGCTAGCAAGGAACTACCTAGGGGTGGAGTCGCACGTGATGTTCGAGGCGGTGGAGGGGTGTATCCGCTCCGGTGGGTCGCTCACGCCGGCGCATGTGGGGGAGATTCTGTTGAGGAATCGGGGAGATGCTGATGTGGCGTTGAGGGAGGTGGTGGCGGCGATGCAGGGGAGGGTGGTTGGTGGTGGCGGCGACAGTGGTGATCAGACGACGACAGATAGTGAGGATGTGGCGGTGGTTGGGGTGAGGTCGCCGGAGAGTGTGTTGATGATGGGGTCGCCGGAGAATTGGGATTCGTTGGGCGGGAAGAGGAGGAAGGAGCAGCATCATGCGTCGAGTCATTTGGAGAAAAAAGTCAAATTCTTTGTGAGGTTGAGGTCGTTGACCAAATCTGACTCGGGTAGAAGATGA 1572 0.5821 MEILSQMWSLLGLLTVLQNVLPSQLLSVLHSLYESLQDLLSPYSYFEIPEFNGYCGVELNDLYRHVHLYLNAVNHSPAATCRRLTLSRSPSSKRISFAVAPNHTVNDTFGGHRLSWTHQVDTVQDSLEERRSFTLRFPKRHRHALLSPYLTHVTARAEEFERVSRERRLFTNNNGSGSFESGWVSVPFRHPSTFETLALEPDLKKRIKTDLTNFSTGREFYHRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVTDNSELRSLLIQTTSRSIIVIEDIDCSVDLTADRSLKKTTGSKSSSRTRKESNKTASCGDETGRVTLSGLLNFTDGLWSCCGEERLVVFTTNHRESIDPALVRCGRMDVHVSLGTCGVHAFRELARNYLGVESHVMFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVALREVVAAMQGRVVGGGGDSGDQTTTDSEDVAVVGVRSPESVLMMGSPENWDSLGGKRRKEQHHASSHLEKKVKFFVRLRSLTKSDSGRR* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4032 523 Pfam Domain associated at C-terminal with AAA 21 119 IPR025753 -
Lja3g4032 523 PANTHER BCS1 AAA-TYPE ATPASE 2 520 - -
Lja3g4032 523 ProSitePatterns AAA-protein family signature. 350 368 IPR003960 GO:0005524|GO:0016887
Lja3g4032 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 403 IPR027417 -
Lja3g4032 523 PANTHER OS09G0445700 PROTEIN 2 520 - -
Lja3g4032 523 CDD AAA 229 290 - -
Lja3g4032 523 Gene3D - 189 376 IPR027417 -
Lja3g4032 523 MobiDBLite consensus disorder prediction 478 501 - -
Lja3g4032 523 Gene3D - 377 447 - -
Lja3g4032 523 SMART AAA_5 228 380 IPR003593 -
Lja3g4032 523 Pfam ATPase family associated with various cellular activities (AAA) 233 378 IPR003959 GO:0005524|GO:0016887
Lja3g4032 523 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4032 Lja-Chr3 79471048 79473929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4032 230 380 Calmodulin-binding Proteins AT3G56690 26.415 6.57e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4032 K08900 - gmx:100820437 828.165