Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4031 ATGGATGAAATTCAAGCTGAGCAACAACATCTAGAAGGTGGACAACATACTCCAGGACCAGAAGCCAATGTCACGAACCAAAACAAGCCCAATCAAATGACAAAAGACACACAGATAACTGGTGGTTCTTCCTCTTCTTACTACCCAAGAGGGAAAAAGCTGCATCATCCTCATCAACAACAGCTGCAAAGACAAGTACGCAACTTTTGGGAAACACAGTGCAAGGAAATTGAGAGCACCACTGATTTCAAGAATGCATTGCCTTTGAAGAGGATCAAGAAGATCATGAAAGATGATTGTGAGAAGATGATAGCACATGAGGCTCCTCTTCTTTTGTCGAAGGCGTGTGAGATGTTCATTATGGATCTGACAGCGAGGGCTTCGGTGAATGTGGGCATGAGGACGATCCTTCAAAAGAGGGACATTGTATCAGCAGCCTCAATGAATGATATGTTTGACTTTCTTATTGATATTCTTCCTAGGGATGAGACCGTGAAGCATGAAGTGTGTGTTGGGATACCACCAATGAGGGGAAATGCTGCTGATGTTGTTCAGAATATCCCTCCTCATCCTTTCTATTACATGCCATCACCTCCTCCTCACTATTTTTGTGCTACAATTCCTCATCCTATTTTTGGGCAACAACCACCCCATCTAAGCGGTCTTAAAGCAATCTACCCAGCCCCAAAACATTTGATTGTGAAAAACTCTTCAGATTCTGATGATCAGAATAAAAAATAG 741 0.4251 MDEIQAEQQHLEGGQHTPGPEANVTNQNKPNQMTKDTQITGGSSSSYYPRGKKLHHPHQQQLQRQVRNFWETQCKEIESTTDFKNALPLKRIKKIMKDDCEKMIAHEAPLLLSKACEMFIMDLTARASVNVGMRTILQKRDIVSAASMNDMFDFLIDILPRDETVKHEVCVGIPPMRGNAADVVQNIPPHPFYYMPSPPPHYFCATIPHPIFGQQPPHLSGLKAIYPAPKHLIVKNSSDSDDQNKK* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4031 246 Gene3D Histone, subunit A 51 161 IPR009072 GO:0046982
Lja3g4031 246 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 168 - -
Lja3g4031 246 MobiDBLite consensus disorder prediction 1 57 - -
Lja3g4031 246 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 87 131 IPR003958 -
Lja3g4031 246 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 24 168 IPR027170 GO:0003700|GO:0006355|GO:0016602
Lja3g4031 246 SUPERFAMILY Histone-fold 55 155 IPR009072 GO:0046982
Lja3g4031 246 MobiDBLite consensus disorder prediction 19 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4031 Lja-Chr3 79465603 79466343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4031 68 196 CCAAT-HAP5 Transcription Factor Family AT1G54830 48.872 7.73e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja3g4031 CBFD_NFYB_HMF 6.2e-10 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4031 K08066 - lja:Lj3g3v0933440.1 134.42