Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4021 ATGATTACTTCAACGACCTTCTCCACCGCCGCCGTTGACGCCGTTTCTCCCTTCGAACCCCAATCCACCCCTCCCCCTCTCGATGCCCCTCCTGTGCCCCCTCGATCTCCGATCCCGCAGGTCCCTCCGCAAGAAATTATCCTCCTCTTCCTTCAACAGAACCCAGGCATGCATCTCCTTTTCTCTCAACCTTTCTTTTTGGTTTTTCATGATCTTTTATGCGACACCTTTTTCAATCGGGGGCGCTTCAAATCCAAAGACAACTGCACCGCCTTTAAGCGTCTTCCATTCTATTGCTGCGCCCTCACGTTTACACCGTTTGAGTATCCTGTTTGTACACCTGATGGCAGCGTTTTCGATGTTATGAATATCACTCCTTATGTTATCAAATATGGTAAACATCCTGTCACCGGAGCTCCGTCCGGATCTCATTCCACTCAATTTCCACAAGAATTCAGAAGGTACTTTGCCAACAATCACTATGTGTTTTGCTGGAATTATTTTTAA 507 0.4734 MITSTTFSTAAVDAVSPFEPQSTPPPLDAPPVPPRSPIPQVPPQEIILLFLQQNPGMHLLFSQPFFLVFHDLLCDTFFNRGRFKSKDNCTAFKRLPFYCCALTFTPFEYPVCTPDGSVFDVMNITPYVIKYGKHPVTGAPSGSHSTQFPQEFRRYFANNHYVFCWNYF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4021 168 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 81 144 IPR044666 -
Lja3g4021 168 ProSiteProfiles U-box domain profile. 93 140 IPR003613 GO:0004842|GO:0016567
Lja3g4021 168 SMART Ubox_2 97 161 IPR003613 GO:0004842|GO:0016567
Lja3g4021 168 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 81 144 - -
Lja3g4021 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 144 IPR013083 -
Lja3g4021 168 SUPERFAMILY RING/U-box 96 144 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4021 81 140 U-box Gene Family AT5G67530 70.000 6.30e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4021 K10598 - lja:Lj2g3v1968380.2 125.946