Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4007 ATGGTGGTTTATCAGGACATCCTCTCTGGTGATGAACTTCTCTCAGAATCTTTTGTATGGAAGGAAATTCAGGACAAAAGATTGTGGGAAGTTGAAGGAAAGACTGTTGTTAAAGGTGGAGAATATGAGATTGTTGATGACCAAGTTGTTAAGGTTGTTGATATTGTGGACACATTTAAACTCCAGGAACAACTTTCTCTTAACTGCACACAACTTCTTGTATTCTTTGCGAATCATGTCAAGAAGTTGAGACCTAAACTTGACAAGGTGGATGATTTCAACAAATGCTTTGAAGAAAATGAATGGCTAAGGGGAGTTGGTATTTTCTTCCTTGGAGCTTGTAAAGCTGGTATGACAATCGTTTATTGTCCCAATCCATCTCATGATCCTTCATTTGAAGATTCAGGTGACGGTAAGGAGGCTGACCCTGAAATTCAATATGAGGTGTTTACTAGAGCCCTTATTAGCGTGATTAAAAACTATAAGGGGAAGATTGAGAACCGTTGGTTAGCCACTAAAATGCTAGTTGACTCAAGGGGAACAGCTGGTTGGAGGGCTCCAGAGCTCAGAGCTGGGCATGCTGATTTACGGTTTGTAGATGTGTATGCTTTAGGATTGATTATTTACTATTGCCTATCACATGGAGGACAACCTTTTTGGGATAAAAGTTTCAAAAGATTTATTATTGAGGGACTCCATTCCTTGCGTGAATGTGACGATAATGCTGCTGTGAATTTAAAGAATCTTGATTTAAACATGCAAGGTGAAGCTTTACATCATGTTTGTGAGCTGTTAAGACATAATCCTACTAGAAGGATAGGTGCAAAAAGAGTATTGTCACACCCTCTGTTCTGGTGCTCAGCAAAGAAAATGAACTTTTTAGTCGAAGCTAGTAATAGGATGGGCAGGCCAGATGAATTATCTTCTGAAGTCATAGCTTTAGAGATGAATCGAGATTGGGTCTATAGAGGTGGGGAGACATGGACCAGATTCTTCCCACGTGATCATGTAACAAAACTGAGTGGCGGGTATTATTGGAGCTTCAAAGGATAG 1053 0.3989 MVVYQDILSGDELLSESFVWKEIQDKRLWEVEGKTVVKGGEYEIVDDQVVKVVDIVDTFKLQEQLSLNCTQLLVFFANHVKKLRPKLDKVDDFNKCFEENEWLRGVGIFFLGACKAGMTIVYCPNPSHDPSFEDSGDGKEADPEIQYEVFTRALISVIKNYKGKIENRWLATKMLVDSRGTAGWRAPELRAGHADLRFVDVYALGLIIYYCLSHGGQPFWDKSFKRFIIEGLHSLRECDDNAAVNLKNLDLNMQGEALHHVCELLRHNPTRRIGAKRVLSHPLFWCSAKKMNFLVEASNRMGRPDELSSEVIALEMNRDWVYRGGETWTRFFPRDHVTKLSGGYYWSFKG* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4007 350 PANTHER TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOG 1 96 - -
Lja3g4007 350 SUPERFAMILY Protein kinase-like (PK-like) 174 302 IPR011009 -
Lja3g4007 350 PANTHER TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED 1 96 IPR018105 -
Lja3g4007 350 PRINTS Translationally controlled tumour protein signature 45 64 IPR018105 -
Lja3g4007 350 PRINTS Translationally controlled tumour protein signature 1 21 IPR018105 -
Lja3g4007 350 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4007 350 ProSiteProfiles Translationally controlled tumor protein (TCTP) domain profile. 1 95 IPR034737 -
Lja3g4007 350 Pfam Protein kinase domain 175 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4007 350 Gene3D Transferase(Phosphotransferase) domain 1 155 286 - -
Lja3g4007 350 SUPERFAMILY Mss4-like 1 93 IPR011057 -
Lja3g4007 350 Pfam Translationally controlled tumour protein 1 95 IPR018105 -
Lja3g4007 350 Gene3D Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 1 101 IPR011323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4007 Lja-Chr3 78977668 78982103 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Lja3g4007 Pkinase 2.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4007 - - ath:AT3G05540 98.2117