Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4006 ATGGAGTTTCGGAAGATAAAGGTTGACAACCCCATCGTCGAAATGGACGGAGATGAAATGACACGAGTAATTTGGAAATTGATAAAAGATAAGCTTATTTTCCCATTTTTGGAGCTCGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGGGATGCCACTAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATAATGTAGCTATCAAGTGTGCAACTATAACTCCAGATGAAGCTCGTGTCAAGGAGTTTAACTTGAAACAAATGTGGAAGAGCCCAAATGGGACAATTCGTAACATTTTAAATGGTACAGTTTTTAGAGAACCGATTATCTGCAAAAATGTTCCTCGTCTTGTTTCAGGCTGGACAAAGCCAATATGCATTGGAAGACATGCATTCGGTGACCAATATCGGGCAACTGATACAATTATAAGAGGACCAGGAAAGCTAAAATTGGTGTTTGAACCTAGTGGACATGAAGAAATTAAAGATCTAGAAGTTTATAACTTCGATGGTGCTGGAGGTGTAGCTTTGTCCATGTATAATACTGATGAGTCCATTCAAGCTTTTGCTGAGGCCTCGATGAACATTGCTTACCAGAAAAAATGGCCTCTCTATCTTAGCACTAAAAATACCATTCTCAAGAAATATGATGGAAGATTCAAGGACATTTTCCAGGAAGTTTTTGACACACAATGGAGTCAAAAGTTCAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCGTATTCTCTTAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGGGATGTGCAAAGTGATTTCATAGCTCAAGGATTTGGTTCTCTTGGCTTGATGTCATCAATACTGGTTTGTCCAGATGGGAAAACCATTGAATCAGAGGCAGCCCATGGCACTGTTACCCGTCATTATCGAGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCGCGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGATTGTCGGACTTTACTGAGAAACTGGAAACAGCATGCATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTCGCGCTTCTTGTTCATGGACCTAAGGTTTATAGATCCCAGTATTTCAATACTGAAGAGTTCATTGATGCCGTAGCGGATCAGCTGAGAACAAGATTATCTACACAAGCGAAGCTATAA 1251 0.4037 MEFRKIKVDNPIVEMDGDEMTRVIWKLIKDKLIFPFLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLVSGWTKPICIGRHAFGDQYRATDTIIRGPGKLKLVFEPSGHEEIKDLEVYNFDGAGGVALSMYNTDESIQAFAEASMNIAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSQKFKAAGIWYEHRLIDDMVAYSLKSDGGYVWACKNYDGDVQSDFIAQGFGSLGLMSSILVCPDGKTIESEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLSDFTEKLETACIGTVELGKMTKDLALLVHGPKVYRSQYFNTEEFIDAVADQLRTRLSTQAKL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4006 416 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Lja3g4006 416 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 4 411 IPR004790 GO:0004450|GO:0006102
Lja3g4006 416 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 415 IPR004790 GO:0004450|GO:0006102
Lja3g4006 416 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
Lja3g4006 416 SMART Iso_dh_2 11 402 IPR024084 -
Lja3g4006 416 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Lja3g4006 416 PIRSF IDH_NADP 1 413 IPR004790 GO:0004450|GO:0006102
Lja3g4006 416 Gene3D Isopropylmalate Dehydrogenase 3 415 - -
Lja3g4006 416 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4006 Lja-Chr3 78963438 78969914 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4006 K00031 - gmx:606295 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4006 3 78963438 78969914 Lja3g4006 3 78963438 78969914 ECH