Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4005 ATGGAGTCAAAGCCTTTCAAAATGCCGGAATCACAAGACATGAATAACAACTTTTCAGACAAGCCTCATAAGCAGTACGATAAAGTTCATAGTTGTGCAAGTTCAGAAAATAATTCACCAACTCATCCCATGAGCTGGAATCAAGCTGAAAATGGATTCTCCAAGACTGATAATTCAACAAGGGATTCTGAACATATGGATCATGCTTCTAAAACTGATGCAAAGTCGGCAAGTAAACCAAATCCTCCAAAATTAGCACCAACAAACAGAAACATTTCTGATTTTGGTGTTCAACAACGCCTAAGTCCAAAGAAAAAATTGCCTCCAAGTTCTGATCCTACCTCTCCCAAACCAGTATTTCCAACAGGACTTTCAAAGGGAGCCTCTACCCATGCAAAGAGTACCAGTCAAGGACTGGGAAGTGGGACTAGCTCTCGCAGCGACAGTTTAGAGAGTACTAGTGCAACCATGAGGCCACACACAGGTGGTGATGTAAGGTGGGATGCAATTAACAGGGTTTCCAGGGGTGGTGCTCTCAATCTCAGCCATTTTAGGCTTCTCAAGCGCATTGGTTATGGGGACATTGGAAGTGTGTATCTTACAGAACTTAGAGGGACTAATGCTCACTTTGCCATGAAAGTGATGGATAAGGCAGCTCTTATAAGCAGAAACAAGCTCCTGAGAGCACAGACAGAAAAGGAGATTCTAGGACTTCTTGATCACCCCTTCTTGCCCACTTTATACTCTTACTTCGAAACTGACAAGTTTTACTGCTTGGTCATGGAGTTCTGTAGCGGGGGTGATCTTCATTCTCTTCGACAGAAGCAACCAAACAAGTGTTTCCCTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGGTTTTGTTAGCACTTGAGTACCTGCACATGCTTGGAATTGTATACAGAGACTTAAAGCCAGAGAATCTTTTAGTCAGAGATGAAGGGCACATCATGCTCTCAGATTTTGATTTATCGCTTCGCTGCTCGGTATGTCCTACACTCGTCAAGTCTTCATCTACCAATACAGGAAATAGTGGTAGTGGCGATTCTGGGAACATGTTAGGTGATGAGCAACTAGCACAAGGCAGTGCTCCAACATCATCAGGATTCTTCCCCCGCATTTTGCCATCGAAGAAGAACCGCAAGGCGAAATCAGATTTTGGTGTACTAGTTGGGGGAGTTCGTCTTCCTGAGCTGATGGCAGAACCCACCAATGTCCGCTCCATGTCATTTGTAGGAACACATGAATATCTTGCTCCTGAGATCATCAAAGGAGAGGGACATGGTAGTGCAGTGGATTGGTGGACTTTTGGGATCTTCTTGTATGAGTTGTTGCATGGAACAACCCCTTTTAAAGGTTCAGGTTACAAAGCTACACTTTTCAATGTTGTTGGGCAACCATTGAGGTTTCCCGACGGTCCCCAAGTGAGTTCTAACGCTCGTGATCTTATTAGAGGGTTATTAGTGAAAGAGCCTCAAAAGAGAATTGCATATAAAAGAGGAGCTACTGAGATAAAACAACACCCATTTTTTGAGGGAGTGAACTGGGCTCTAGTTAGATGTGCAGTACCTCCACATGTACCAGAAGCCATAGACTTTTCCAAGTATGCTAGCAAAGACCCAACTCCACCACCACCAGCAGCTGATAAGAAGATTGCAGATGTTGCTAGTGATAAAAACAGCAAAAGCAAACCTGATTCCTATGTAGATTTTGAGTATTTTTAG 1743 0.4349 MESKPFKMPESQDMNNNFSDKPHKQYDKVHSCASSENNSPTHPMSWNQAENGFSKTDNSTRDSEHMDHASKTDAKSASKPNPPKLAPTNRNISDFGVQQRLSPKKKLPPSSDPTSPKPVFPTGLSKGASTHAKSTSQGLGSGTSSRSDSLESTSATMRPHTGGDVRWDAINRVSRGGALNLSHFRLLKRIGYGDIGSVYLTELRGTNAHFAMKVMDKAALISRNKLLRAQTEKEILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHSLRQKQPNKCFPEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVCPTLVKSSSTNTGNSGSGDSGNMLGDEQLAQGSAPTSSGFFPRILPSKKNRKAKSDFGVLVGGVRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGYKATLFNVVGQPLRFPDGPQVSSNARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRCAVPPHVPEAIDFSKYASKDPTPPPPAADKKIADVASDKNSKSKPDSYVDFEYF* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4005 580 Gene3D Phosphorylase Kinase; domain 1 182 263 - -
Lja3g4005 580 MobiDBLite consensus disorder prediction 31 56 - -
Lja3g4005 580 SMART serkin_6 184 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4005 580 MobiDBLite consensus disorder prediction 57 74 - -
Lja3g4005 580 MobiDBLite consensus disorder prediction 540 580 - -
Lja3g4005 580 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 37 580 - -
Lja3g4005 580 Gene3D Transferase(Phosphotransferase) domain 1 411 535 - -
Lja3g4005 580 PANTHER FLIPPASE KINASE 1-RELATED 37 580 - -
Lja3g4005 580 MobiDBLite consensus disorder prediction 342 380 - -
Lja3g4005 580 MobiDBLite consensus disorder prediction 82 98 - -
Lja3g4005 580 ProSiteProfiles Protein kinase domain profile. 184 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4005 580 SUPERFAMILY Protein kinase-like (PK-like) 177 537 IPR011009 -
Lja3g4005 580 MobiDBLite consensus disorder prediction 342 376 - -
Lja3g4005 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Lja3g4005 580 MobiDBLite consensus disorder prediction 558 580 - -
Lja3g4005 580 Pfam Protein kinase domain 414 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4005 580 Pfam Protein kinase domain 185 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4005 580 CDD STKc_phototropin_like 182 538 - -
Lja3g4005 580 Gene3D Transferase(Phosphotransferase) domain 1 264 333 - -
Lja3g4005 580 MobiDBLite consensus disorder prediction 127 159 - -
Lja3g4005 580 MobiDBLite consensus disorder prediction 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4005 Lja-Chr3 78959749 78962397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4005 150 580 AGC Kinase Gene Family AT1G79250 71.302 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g4005 Pkinase 7.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4005 - - gmx:100819001 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4005 3 78959749 78962397 Lja3g4005 3 78959749 78962397 ECH