Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4003 ATGGCTGCCGCCGATGCAACTCCCGCTCAGCCGCGCCTGCTGTCGCAGAAGGAGGCCGACATCCAGATGATGCTCGCCGCCGATGTTCACCTCGGCACCAAAAACTGCAACTTCCAGATGGAGCGTTACGTCTTCAAGCGCCGCACTGATGGTATTTATATAATTAACCTTGGGAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCTATTGAAAATCCTCAGGATATCATTGTTCAGTCAGCTAGGCCTTATGGACAGAGAGCAGTGCTGAAGTTTGCTCAGTACACTGGGGCCAATGCAATTGCAGGGAGGCATACTCCTGGAACATTCACTAATCAGATGCAGACATCCTTCAGCGAGCCTCGCCTTCTCATTTTGACTGACCCAAGAACTGATCATCAGCCTATTAAGGAAGGTGCTCTTGGAAATATTCCAACCATTGCTTTTTGTGACACCGATTCTCCAATGCGGTATGTTGATGTTGGAATTCCTGCCAACAATAAGGGAAAGCACAGCATTGGTTGTCTCTTTTGGCTATTGTCAAGGATGGTGCTGCAGATGCGTAGTACTATTCGTCCAGGGCAGAAGTGGGACGTAATGGTTGATTTATTCTTCTATAGAGACCCTGAGGAGACCAAGAAAGAAGAGGAAGAAGAAGCACCAGTGCAAGATTTTGCCATTTCAGGCTACAATGCTGCTGGGATGGACAGCTTCCCTACTGATGGCCAGTGGCCTTCTGCACTTGAACAACCCTGGTCTGAAGAAGTTCCCCAGCCAATCTCAGCTGTTCCTGGTAACTGGGCGGCACCAGAAGCTGCTGGAGGTTGGGGTGAGACTGTTCCAGCTCCACAAGTTGCTGTGCCTGCAACTGAAACCATTCCTGCCGTTCCATCTGAACCAGTTGTCGCCACTGGCTGGGATTAG 936 0.4989 MAAADATPAQPRLLSQKEADIQMMLAADVHLGTKNCNFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLSRMVLQMRSTIRPGQKWDVMVDLFFYRDPEETKKEEEEEAPVQDFAISGYNAAGMDSFPTDGQWPSALEQPWSEEVPQPISAVPGNWAAPEAAGGWGETVPAPQVAVPATETIPAVPSEPVVATGWD* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4003 311 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 Pfam Ribosomal protein S2 122 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 Pfam Ribosomal protein S2 24 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 PANTHER 40S RIBOSOMAL PROTEIN SA 14 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lja3g4003 311 Hamap 40S ribosomal protein SA [rps-0]. 8 259 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lja3g4003 311 PANTHER 40S RIBOSOMAL PROTEIN SA 14 293 - -
Lja3g4003 311 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Lja3g4003 311 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g4003 311 Gene3D - 20 225 - -
Lja3g4003 311 TIGRFAM uS2_euk_arch: ribosomal protein uS2 16 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lja3g4003 311 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4003 Lja-Chr3 78933522 78936338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4003 3 286 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.913 1.76e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4003 K02998 - gmx:100786575 501.13