Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4002 ATGAGAAGGGCATTGGCCACTTCTAGGTTTGCTTGGTTTCACAGTAGTGTCCATTGTAGGAGCCAGGTGGAACCCCATCATGGTTCCCTCACTCTTTCAAGCATTGGACTTCATAGTGAAACAGCAGCAGCATCAAATAAGCCTAATAAGCCATTAGGTTCCACCTCTGAATCTCTCAAGAACAAAGGAAAGCCATTTGGCAGTAATGAGAGGGAACCAGTTAGGGTTATAGAGAAACAACAGCAAATAGAGCCTGCCCCTTTTGCTGCCAAGTCATTTTCAGAACTTGGCCTTCCTAATGTGTTGGTTGAGAGGCTAAAAAATGAGGGTTTCGCGGTTCCAACAGAGGTTCAGTGTGCTGCAGTTCCTACCATTCTGAAGAACCATGATGTTATCATTAAGTCTTGGAAAGGTTCAGGGAAAACATTGGCTTATCTCCTTCCTATTTTATCTGCTATTGGGCCACTCAGGAATAAGTTTCCTCAAGGAGATGGCGATGGTGGTGAGCCTGCGAAGAAATTGGGAATAGAAGCATTGATTGTTGCTCCTTCGAGGGAGATTGGAATGCAGATAGTGATGGAACTTGAAAAGATACTAGGAAGCGATAACAAGAGAGTGGTTCAGCAGTTAGTGGGAGGCGGGAACCGAAGCCGGCAGGAAGAAGCTCTCAGGAAAAATAAACCTGCCATTGTTGTTGGGACACCTAGTAGAATAGCCGAGCTTAACATGCACCGGATGTTGGAGCATGTGGGGAGAAGATCCGATGCAGGTGCAGACCCAAACTCAAATGCTGAAAGGGCTGAGCACCAGTTAATAATGGTTTCTGCAACTGTGTCGTCCTCTGTTGTAAGTGCAGCTAGGAGCTGGGGTTGTGACCCGCTTCTTGTCCGAGATAACAAGGTTGTCCCACTTGAAACCGTGACTCCCGCTGAGCCTGTCAAATTGGCAATATCTTCAGCCAGCTCCAGTCCTAACTCATCCATGCCATCTCAGGCAGCAGTAGAGAGTCTACCTCCAGCATTGAAGCACTATTACTGTGTAGTAAGGTTGCAGCACAAGGTTGATACATTGAGAAGGTGTATTTATGCGCTGCACGCCAAATATGTGATAGCTTTCATGAACCATACTAAGCAGCTAAAAGATGTTGTTTGCAAGCTGGAGGCCCGTGGGATGAAAGCTGCCGAGTTACATGGGGATCTTGGGGAGCTTGCGAGGTCAACAATTCTGAAGAAATTCAAGAATGGTGATGTGAGAGTTCTGGTGACAACTGAATTATCAGCAAGGGGTCTGGATGTGGCAAAATGCGATCTTGTGGTTAATCTGGAGTTGCCTACGGATTCAATTCACTATGCTCACCGAGCTGGCCGAATTGGTCGGCTTGGTAGGAATGGAACAGTGCTAACCATATGCAAAGATCCAGAAGTTTTTGTTCTGAAGAAATTGCAGAAGCAGCTTGGAATACCAATACCATGTTGTGATATTGCAGAGAGAAAGCTGGTTGTTACTGCAGAAGATAAAGCACTAAGCACTCCTTGA 1536 0.4609 MRRALATSRFAWFHSSVHCRSQVEPHHGSLTLSSIGLHSETAAASNKPNKPLGSTSESLKNKGKPFGSNEREPVRVIEKQQQIEPAPFAAKSFSELGLPNVLVERLKNEGFAVPTEVQCAAVPTILKNHDVIIKSWKGSGKTLAYLLPILSAIGPLRNKFPQGDGDGGEPAKKLGIEALIVAPSREIGMQIVMELEKILGSDNKRVVQQLVGGGNRSRQEEALRKNKPAIVVGTPSRIAELNMHRMLEHVGRRSDAGADPNSNAERAEHQLIMVSATVSSSVVSAARSWGCDPLLVRDNKVVPLETVTPAEPVKLAISSASSSPNSSMPSQAAVESLPPALKHYYCVVRLQHKVDTLRRCIYALHAKYVIAFMNHTKQLKDVVCKLEARGMKAAELHGDLGELARSTILKKFKNGDVRVLVTTELSARGLDVAKCDLVVNLELPTDSIHYAHRAGRIGRLGRNGTVLTICKDPEVFVLKKLQKQLGIPIPCCDIAERKLVVTAEDKALSTP* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4002 511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
Lja3g4002 511 CDD SF2_C_DEAD 341 470 - -
Lja3g4002 511 Gene3D - 38 297 IPR027417 -
Lja3g4002 511 SMART helicmild6 380 461 IPR001650 -
Lja3g4002 511 MobiDBLite consensus disorder prediction 41 73 - -
Lja3g4002 511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 500 IPR001650 -
Lja3g4002 511 MobiDBLite consensus disorder prediction 41 63 - -
Lja3g4002 511 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 16 490 - -
Lja3g4002 511 SMART ultradead3 110 307 IPR014001 -
Lja3g4002 511 Gene3D - 338 501 IPR027417 -
Lja3g4002 511 Pfam Helicase conserved C-terminal domain 363 461 IPR001650 -
Lja3g4002 511 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 16 490 - -
Lja3g4002 511 CDD DEADc 102 241 - -
Lja3g4002 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 481 IPR027417 -
Lja3g4002 511 Pfam DEAD/DEAH box helicase 115 242 IPR011545 GO:0003676|GO:0005524
Lja3g4002 511 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4002 Lja-Chr3 78928606 78930228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4002 76 489 Eukaryotic Initiation Factors Gene Family AT3G19760 24.879 9.15e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4002 - - gmx:100812968 722.235