Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4001 ATGCCAGCTTTGATATCAGCTAAGTTTTTTTCCCTTGTTGGAGGGTCATTCCCAATGAGAAGGGTTTTGGCCAATTCTAGGTTTGCTTGGTTTCACAGTAGTGTCCATTGTATGAGCAAGTTGGAACCCCATCATGGTTCTCTCACTCTTTCTAGCATTGATGTTCAAAGTGAAGTTGACCCCAAGAACAGAACCAAATTGAATAAGCCTTATAAGGCATTGAGTTCCTCCTCTGAGTCCCTCAAGAACAAAGGAAAGCCCTTTGGTAATAATGAGAGGAAACCAGTTAGGGTTTTAGATAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCAGAGTCATTTTCGGAACTTGGCCTTCCGAATGTGTTGATTGACAGGCTGGAAAATGAGGGTTTCACCGTTCCAACAGAGGTTCAGTCTGCTGCAGTTCCTACCATTCTGAAGGACCATGATGTCATCATTCAGTCTTACACTGGTTCAGGGAAAACATTGGCTTATCTCCTTCCTATATTATCTGCTATCGGGCCACTAAGGAACAAAGTTCCTCAAGGCAGTGGTGAAGGTGGTGATTCTGGGAAGAAATTGGGAATTCAAGCACTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATTGTGAGGGAATTTGAAAAGATACTAGGAATGGATAACAAGAAGGCGGTTCAGCAGCTAGTGGGAGGCGCGAATCGAACCCGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTCGGGACTCCTGGTAGGATAGCTGAGCTCAGTGCAGCCGGGAAGCTTCACACCCATGGATGTCGTTTTTTAGTATTAGATGAAGTTGATGAACTCTTGTCCTTCAATTTCCGGGAAAACATGCACCGGATAATAGAGCATGTAGGGAGAAGATCAGGTGCAGGTGCAGACCCAAACTCGAATGCTGAAAGGGCTGTGCGCCAGTTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGAGCAGCTAGGAGCTGGGGTTGTGACCCACTTCTTGTCCGAGCTAACAAAGTTGTCCCACTTGAAACCGTGTCTCCTGCTGAGCCTATCAAATTGTCAATATCTTCACCCAGCTCCAGTGCTAACTCATCCATGCAAACTCAGGCAGCAGTTGAGAGTCTACCTCCAGCGTTGAAGCACTATTACTGCGTTGTTAGGTTGCAGCACAAGGTTGATACATTGAGAAGGTGTATTCATGCGCTGGATGCCAAATATGTGATAGCTTTCATGAACCATACTAAGCAGCTAAAGGATGTTGTTTTCAAGCTGGAGGCCCGTGGAATGACAGCCACAGAGTTACATGGGGATCTTGGGAAGCTTGCGAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCTGCAAGGGGTCTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGAATTACCTACGGATTCAATTCACTATGCTCACCGGGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGAACAGTGCTAACTATATGCGAAGAGCCTGAAGTTTTTGTTGTGAAGAAATTGCAGAAGCAGCTTGGAATACCAATACCATGTTGTGATATTACAGAGGGAAAGCTGGTTGTCACTGAAGAAGAGAAAGTACTAAGTCCTTCTTGA 1686 0.4531 MPALISAKFFSLVGGSFPMRRVLANSRFAWFHSSVHCMSKLEPHHGSLTLSSIDVQSEVDPKNRTKLNKPYKALSSSSESLKNKGKPFGNNERKPVRVLDKQQIESAPFAAESFSELGLPNVLIDRLENEGFTVPTEVQSAAVPTILKDHDVIIQSYTGSGKTLAYLLPILSAIGPLRNKVPQGSGEGGDSGKKLGIQALIVAPSRELGMQIVREFEKILGMDNKKAVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRFLVLDEVDELLSFNFRENMHRIIEHVGRRSGAGADPNSNAERAVRQLIMVSATVPFSVVRAARSWGCDPLLVRANKVVPLETVSPAEPIKLSISSPSSSANSSMQTQAAVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKYVIAFMNHTKQLKDVVFKLEARGMTATELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIPCCDITEGKLVVTEEEKVLSPS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4001 561 MobiDBLite consensus disorder prediction 71 94 - -
Lja3g4001 561 Gene3D - 56 348 IPR027417 -
Lja3g4001 561 CDD SF2_C_DEAD 391 520 - -
Lja3g4001 561 CDD DEADc 123 347 - -
Lja3g4001 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 28 539 - -
Lja3g4001 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 531 IPR027417 -
Lja3g4001 561 Pfam DEAD/DEAH box helicase 136 332 IPR011545 GO:0003676|GO:0005524
Lja3g4001 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 550 IPR001650 -
Lja3g4001 561 Pfam Helicase conserved C-terminal domain 405 511 IPR001650 -
Lja3g4001 561 SMART helicmild6 430 511 IPR001650 -
Lja3g4001 561 MobiDBLite consensus disorder prediction 71 85 - -
Lja3g4001 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 28 539 - -
Lja3g4001 561 Gene3D - 388 546 IPR027417 -
Lja3g4001 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 346 IPR014001 -
Lja3g4001 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Lja3g4001 561 SMART ultradead3 131 366 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4001 Lja-Chr3 78922620 78924990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4001 113 539 Eukaryotic Initiation Factors Gene Family AT3G19760 24.824 1.12e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4001 - - gmx:100812968 877.085