Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3993 ATGGCGACGTTCCTCACCTTACGATGCGGCGGCTGCCGCAAGAACCTCCGCGCCGGAGCGGGGGTCACGGAGTTGCAGTGCCCTAACTGTCAAATGCCGAACTCATTCGCCAGCGCCATCGATTCCTCCGCTGCGCAACTTCGCTGCTCCGCCTGCAAGTCTCTCGTCATCGCTCCGGTTGGCCTTGCCAGGTTCCCTTGCCCTCAGTGCGCCGTTGAGCTCGATGTTCAAGTCGACGGCGACGGCGACGACGTCAACGAGCTAGTTGTTGAAGTGGAGCGTGATGAAGATGGTGGTGGTGTGGCTGGAGAAACATTTATGGACTATCGACCTGCCAAGGTATCTATGGGACCTCCCCACCCAGATTCTGTCGTGGAGACATCTTCCTTGTCTGCAGTGCCGCCACCTGAGCCTACTTATAATCCAAGGATTAAAGATCATTTGGAAAGTTCGAAGACTTTGTCAAGCTTGCAGATTGAGACATTGGTCTATGCTTGTCAGAGACATACTCAACACCTTCCTGATGGCACTAGGGCAGGGTTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCACCATGGGAGGAAAAAAGCCTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGATTTGGATGACATGGATGCAACTTGCATTAAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGAATCAAAGGCTGTTGGGGTTAGGGATGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCTTCTTCTGAGAAAAGTCGTAGCCGTCTCCAACAGCTTGTGCAGTGGTGTGGGCCAGGGTTTGATGGTCTTATCATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTCCCTGAAATTGGTAAGCAACCAACACGAACGGGGGAAGCAGTACTTGATATCCAGGCTCGTCTACCTGAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAATCTCGCAATATGGCTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACTTCATTTTGTGATTTTGGTGAATTTCTTGGTGCTCTTGAGAGAGGGGGTGTTGGAGCTCTAGAGCTAGTTGCAATGGACATGAAAGCAAGGGGGATGTATTTATGCCGTACTCTTAGTTACAAGGGGGCCGAGTTTGAAGTTATTGAAGCACCATTAGAAGATGAAATGATGAACTTGTATAAAAAGGCTACAGAATTTTGGGTAGAATTGCGTGAAAAATTGCTGTCTGCCATTGCCTTCCTAAATGAGAAACCTAATTGTAGACAACTATGGAGATCATACTGGGCAAGCCACCAGCGCTTCTTTAGACACTTGTGTATGTCTGCTAAAGTACCTACTGTCGTGAGACTAGTGAAGGAAGCATTAATAGAAGATAAGTGTGTAGTCATCGGTCTGCAGAGTACTGGTGAAGCAAGGACAGAAGAAGCTGTTTCAAAATATGGTTTTGAACTTGATGACTTTGTTTCTGGACCCCGGGAATTGCTGCTAAAATTTGTTGAAGAAAATTACCCATTGCCAGAAAAGCCTGAACTTCTCTCTGGAGAGGATGGTGTAAAGGAGCTTCAAAGGAAGAGGCACCTGGCAAGTCCTGAGATTTCTGCAAAAGGAAGAGTCAGAAAAATAGCTAAGCCGCAGCCTCCTAGTGATGCTGAGAGTGATGAAGAATCTGAAACTGCTTCTGCTCTTGAATCTTCTGATTCTGATTACGGACCTGAAAGGGATGAAAGTGCCTTATCTGACCGTGAGTCTACTGACTCTGATTACGATGAGCTTCAGACATGTGAAATTTGCAGTACTGAAGAGGAAAGGGAAAACTTGCTGCAGTGTTCCAGCTGTGGTAAACTAGTCCATCAATCATGCTTGGGATCCCCAATTTGCGATTTGGTTCTCAAAGAATGGTTATGTCATTTGTGCAAGGAAAAAACTGAGGACTATCTCCCTGGAAGACCTGCCTACATTGAACTGAAGAATAGGTATGACACAGTGTTGGAGTGGAAGACAAAGTTATTAGAGATGATTCGTGCATTGGATCTTCCAAACAATCCCTTGGATGATATTATGGACCAGTTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAAAGGTGTGCTTGTGAGGGATCCTAGTGGAAAGGGTGTGATTTATCAGGCTCGTAATATAGATGTCTCTATGGAGATGGCCAACATGCATGAAAAGAAGCTATTTATGGATGGTAAGAAGTTAGTAGCTATTATCTCCGAAGCTGGATCAGCTGGTGTTTCATTGCAGGCAGACAGAAGAGTTGGAAATCAGAAAAGAAGGGTTCATATAACTCTAGAACTTCCATGGAGTGCTGACAGAGCAATTCAGCAGTTTGGAAGAACTCATCGGTCAAATCAAGCTTCAGCACCACAATATAGGTTACTATTTACTAACCTTGGTGGAGAGCGCCGATTTGCATCAGTTGTTGCTAAGAGATTAGAATCACTTGGTGCTTTGACTCAGGGAGACCGCAGGGCTGGTCCTTCATTAAGTGCTTATAATTATGATAGTCCTTATGGAAGGAGGGCTCTGATGATTCTGTACCGTGGAATAATGGAGCAGGATACTCTTCCTGTTGTACCTCCAGGATGTTTTTCTGACAGACCAGATACAATCAAAGGTTTTATAATGCAGGCAAAAGCTGCTCTTATATCTGTTGGAATTGTTAGGGACACCATTCTTGGAGATGATGAAGATTCTAGAAGGTTATTTGGTCGAATTACCGATTCAGATATGCATGACGTTGGGCGATTCCTCAATAGGCTTTTGGGACTGCCTCCTGACACTCAAAATAAGTTGTTTGAGTTATTTTTGAAAATCTTTGATCTTCTTATTCAAAATGCTCGGAATGAAGGTAACCTCGACACTGGCATTGTTGACTTGAAAGCTAATGCCATTGAACTGAAAGGGACTCCCAAGACTGTCTATGTTGATCAAATGAGTGGGGCTTCCACTGTTCTGTTCACATTCATCTTCGATCGTGGGATCTCATGGGAGTTAGCAAATACCATGCTGAATGAGATGCAGAAGGATGGACTGGGTTCATCTAATGATGGTTTCTACAAGTCCAAAAGGGAGTGGCTAGGAAAGCGGCATTTCATTTTAGCATTTGAAAGTTCTGCTTCAGCTATGTATAAGATAATTCGTCCCCCTCTTGGAGAATCACCTCGGGAGATGCACCTGACAGAACTAAAAAGAAAATATACCAAAGTATCAACATTAGAAGAGGCTCAAACTGGCTGGCAAGTTGAATATCAAGCGTCATCTAAACAGTGCATGCACGGTCCCAATTGTAAGCTTCGCAACTTCTGTACAATTGGCTCAAGACTGCAGGAAGTAAATGTCTTGGGTGGCCTCATTCTTCCTGTTTGGAAAACCATAGAAATGGTCCTTTCTAATCAGGCTGTTCAAAGACATAAGAGGTTACGTGTTGTTCGTGTAGAAACTACACCAGATAACCCACATATAGTTGGTCTTCTTGTTCCTAATTCAGCAGTTAAAACTGTGCTTCAAGGTTTAGCATGGGCTCCGAACGTTGATGATTGA 3648 0.4441 MATFLTLRCGGCRKNLRAGAGVTELQCPNCQMPNSFASAIDSSAAQLRCSACKSLVIAPVGLARFPCPQCAVELDVQVDGDGDDVNELVVEVERDEDGGGVAGETFMDYRPAKVSMGPPHPDSVVETSSLSAVPPPEPTYNPRIKDHLESSKTLSSLQIETLVYACQRHTQHLPDGTRAGFFIGDGAGVGKGRTIAGLIWENWHHGRKKALWISVGSDLKFDARRDLDDMDATCIKVHALNKLPYSKLESKAVGVRDGVIFLTYSSLIASSEKSRSRLQQLVQWCGPGFDGLIIFDECHKAKNLVPEIGKQPTRTGEAVLDIQARLPEARVVYCSATGASESRNMAYMVRLGLWGDGTSFCDFGEFLGALERGGVGALELVAMDMKARGMYLCRTLSYKGAEFEVIEAPLEDEMMNLYKKATEFWVELREKLLSAIAFLNEKPNCRQLWRSYWASHQRFFRHLCMSAKVPTVVRLVKEALIEDKCVVIGLQSTGEARTEEAVSKYGFELDDFVSGPRELLLKFVEENYPLPEKPELLSGEDGVKELQRKRHLASPEISAKGRVRKIAKPQPPSDAESDEESETASALESSDSDYGPERDESALSDRESTDSDYDELQTCEICSTEEERENLLQCSSCGKLVHQSCLGSPICDLVLKEWLCHLCKEKTEDYLPGRPAYIELKNRYDTVLEWKTKLLEMIRALDLPNNPLDDIMDQLGGPDKVAEMTGRKGVLVRDPSGKGVIYQARNIDVSMEMANMHEKKLFMDGKKLVAIISEAGSAGVSLQADRRVGNQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPQYRLLFTNLGGERRFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSPYGRRALMILYRGIMEQDTLPVVPPGCFSDRPDTIKGFIMQAKAALISVGIVRDTILGDDEDSRRLFGRITDSDMHDVGRFLNRLLGLPPDTQNKLFELFLKIFDLLIQNARNEGNLDTGIVDLKANAIELKGTPKTVYVDQMSGASTVLFTFIFDRGISWELANTMLNEMQKDGLGSSNDGFYKSKREWLGKRHFILAFESSASAMYKIIRPPLGESPREMHLTELKRKYTKVSTLEEAQTGWQVEYQASSKQCMHGPNCKLRNFCTIGSRLQEVNVLGGLILPVWKTIEMVLSNQAVQRHKRLRVVRVETTPDNPHIVGLLVPNSAVKTVLQGLAWAPNVDD* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3993 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 865 IPR027417 -
Lja3g3993 1215 PANTHER OS08G0223700 PROTEIN 87 1215 - -
Lja3g3993 1215 Pfam PHD-finger 619 666 IPR019787 -
Lja3g3993 1215 PANTHER STRAWBERRY NOTCH-RELATED 42 78 IPR026741 GO:0006355
Lja3g3993 1215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 681 IPR013083 -
Lja3g3993 1215 ProSitePatterns Zinc finger PHD-type signature. 619 663 IPR019786 -
Lja3g3993 1215 Gene3D - 143 351 IPR027417 -
Lja3g3993 1215 PANTHER OS08G0223700 PROTEIN 42 78 - -
Lja3g3993 1215 MobiDBLite consensus disorder prediction 592 613 - -
Lja3g3993 1215 PANTHER STRAWBERRY NOTCH-RELATED 87 1215 IPR026741 GO:0006355
Lja3g3993 1215 SUPERFAMILY FYVE/PHD zinc finger 605 668 IPR011011 -
Lja3g3993 1215 CDD PHD_SF 618 663 - -
Lja3g3993 1215 MobiDBLite consensus disorder prediction 560 575 - -
Lja3g3993 1215 Pfam P-loop containing NTP hydrolase pore-1 119 419 IPR039187 -
Lja3g3993 1215 ProSiteProfiles Zinc finger PHD-type profile. 616 666 IPR019787 -
Lja3g3993 1215 SMART PHD_3 618 664 IPR001965 -
Lja3g3993 1215 MobiDBLite consensus disorder prediction 117 143 - -
Lja3g3993 1215 MobiDBLite consensus disorder prediction 560 614 - -
Lja3g3993 1215 Pfam C-terminal domain on Strawberry notch homologue 706 994 IPR026937 -
Lja3g3993 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 362 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3993 Lja-Chr3 78753336 78778656 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g3993 AAA_34 6.8e-132 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3993 - - gmx:100808670 1842.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3993 3 78753336 78778656 Lja3g3993 3 78753336 78778656 ECH