Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g3992 | ATGGGCAACCTCTTTGGTAGAAATAAAAAGCATAACCCTCAATTTTCTAGATTTGATAGAGGAAGAGAGGGAAGAATCTCCTCCTCCGTAAGTGGCAGACCCTTAAGATCACCTTTTCCAACTGAGCTACCCCGGCCACCTCCACCACCGCCACCACTACCGCAAGCGCCACGACTAGCCGTACCACAATCTAAGAAACCAGCTGGTTATTGGACAGGTAATTCTGAAGAAAGTTCAGTAGCCATGAACAGCAAGAGCAAGCAATCTGCCAAGAAATATGCTCTGATTCGTGATAACTTCAACACCCTTGAGCAGGTTACAGAGGCCTTGAGGAAAGAAGGTTTGGAATCATCAAATCTCATCCTTGGAATTGATTTCACAAAGAGCAATGAATGGACTGGCAAAACATCATTCAATAATAGAAGCCTGCATGCTATTGGAGATACACCTAACCCTTATGAGAAGGCCATCTCAATAATTGGCAAGACAATGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACACACGATCAAGAAGTGTTCAGTTTTCACAGTGATCATTCACCTTGCCATGGCTTTCAAGAAGTTTTGGCTTGCTACCAAAAAATAGTTCCGAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCGGTGATTGAAGCTGCAATAGACATAGTTGAGAAAAGTCGTGGCCAATTCCATGTGTTGGTTGTCATTGCAGATGGCCAGGTTACAAGAAGTGTTGACACAGAAGATGGAGAACTCAGTCCTCAAGAGGAAAAGACAATCAAAGCAATCGTTGATGCAAGTGCATATCCGCTCGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAGAAAGTTTGATGACAAGATACCGGCCCGTGATTATGACAATTTTCAGTTTGTTAATTTTACAGACATCATGTCTAAAAACACAAGCCCCTCAGAGAAAGAAACAGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCATGGAATTTGGAATACTTGGGCGTGTAACAGGAAGAGCAAAGAGAATAGTACCAAGACCTCCACCTGTTCCTTATTCTCGGCCTGCACCACCACCACTACCTCGTGTACCAAGCAACATACCAGCATCTACACCAGAAGAACAAAACCAAGCTGCTTGCCCTGTTTGTCTGACCAATGGAAGAGATTTGGCATTTGGATGTGGGCACATGACTTGCAGAGACTGTGGATCCAGATTAACTAGTTGTCCCATATGTCGCCAGAGGATCACCAGTCGTCTTAGAGTGTACAGTGGGTGA | 1344 | 0.4457 | MGNLFGRNKKHNPQFSRFDRGREGRISSSVSGRPLRSPFPTELPRPPPPPPPLPQAPRLAVPQSKKPAGYWTGNSEESSVAMNSKSKQSAKKYALIRDNFNTLEQVTEALRKEGLESSNLILGIDFTKSNEWTGKTSFNNRSLHAIGDTPNPYEKAISIIGKTMAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFQEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQFHVLVVIADGQVTRSVDTEDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDKIPARDYDNFQFVNFTDIMSKNTSPSEKETAFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPRPPPVPYSRPAPPPLPRVPSNIPASTPEEQNQAACPVCLTNGRDLAFGCGHMTCRDCGSRLTSCPICRQRITSRLRVYSG* | 448 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g3992 | 447 | MobiDBLite | consensus disorder prediction | 68 | 84 | - | - | |
| Lja3g3992 | 447 | Gene3D | von Willebrand factor, type A domain | 116 | 331 | IPR036465 | - | |
| Lja3g3992 | 447 | SMART | VWA_4 | 117 | 320 | IPR002035 | - | |
| Lja3g3992 | 447 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Lja3g3992 | 447 | SUPERFAMILY | vWA-like | 118 | 301 | IPR036465 | - | |
| Lja3g3992 | 447 | MobiDBLite | consensus disorder prediction | 367 | 394 | - | - | |
| Lja3g3992 | 447 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| Lja3g3992 | 447 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 390 | 446 | IPR013083 | - | |
| Lja3g3992 | 447 | Pfam | Zinc finger, C3HC4 type (RING finger) | 400 | 440 | - | - | |
| Lja3g3992 | 447 | SUPERFAMILY | RING/U-box | 397 | 442 | - | - | |
| Lja3g3992 | 447 | MobiDBLite | consensus disorder prediction | 39 | 58 | - | - | |
| Lja3g3992 | 447 | CDD | RING-HC_RGLG_plant | 402 | 445 | IPR045317 | GO:0061630|GO:0070534 | |
| Lja3g3992 | 447 | SMART | ring_2 | 402 | 434 | IPR001841 | - | |
| Lja3g3992 | 447 | MobiDBLite | consensus disorder prediction | 367 | 388 | - | - | |
| Lja3g3992 | 447 | PANTHER | COPINE FAMILY PROTEIN 1 | 1 | 446 | - | - | |
| Lja3g3992 | 447 | Pfam | Copine | 142 | 354 | IPR010734 | - | |
| Lja3g3992 | 447 | ProSiteProfiles | Zinc finger RING-type profile. | 402 | 435 | IPR001841 | - | |
| Lja3g3992 | 447 | PANTHER | UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED | 1 | 446 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g3992 | Lja-Chr3 | 78745441 | 78751252 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g3992 | K16280 | - | gmx:100790153 | 660.603 |
Event-related genes