Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3991 ATGGCTCCAATGACTCTCCCACCTGGATTCAGGTTCCACCCCACAGATGAAGAGCTTGTTGCTTACTACTTAGAAAGAAAAATAACAGGCCGCTCTATAGAGCTTGACATCATAGCAGAAGTTGATCTCTACAAATGCGAACCTTGGGATTTACCAGATAAATCCTTCCTTCCGAGCAAGGACTTGGAGTGGTATTTCTACAGTCCAAGAGACAGGAAGTACCCGAACGGATCAAGGACTAACAGGGCGACAAGAGCTGGTTATTGGAAAGCTACTGGGAAAGATAGGGCAGTGAACTCTCAAAAGAAACAAGTTGGAATGAAGAAGACATTGGTGTACTACAGAGGCAGAGCTCCACATGGGATTAGAACCAACTGGGTTATGCATGAATATCGCTTAATGGAATCAGTGCCTGGAGCTGCACTCTCATCTTTGAAGGATTCATATTCCTTATGTCGCATTTTCAAGAAGCCAATTCAAGTTCAAGCCAAGCCAAAAGAAGAAGATCATGAACAAGCCGAGGAGGGTGCAAAGAAGGAATGGTTCTCAGAGGAACAAGTATTAAGGGAAGACTCAAGTACTGGCACTGAGATTTCAAGAGAAATCGAAACCATGGATGAGAAACTTCTTAATCATGCTTCTTCTTCTGATGTCACACAAGGGACATGTACCCCAACAGATAGAAATAAAACCTGCATGGCAGATGATTTCCAAGCACAATTTTCTTGTGATGAAGCAAATAGTGCAGCAAATTCATATCCAATGGGAATATTAGGCTACCCGTCAAATCTATTTCAGGATATAGAAATACCAATGTATGGCATGCATTATCAACTGCCACAGACACCTTTAGTGCTGGAAGATTTCCCACAAATGAATTTAACAGAGTCAATGAAGCCTGAAATGACTGAAGAATGCATGGTATATGACAGATACAGGGACTGCATGAATGGAACGTTGGAAGAGATCATATCTTTGTGTTCCTCTCAAGACCATTCTGTCGCTTTTCCCATGCTACAATGA 1023 0.4213 MAPMTLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDLEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVNSQKKQVGMKKTLVYYRGRAPHGIRTNWVMHEYRLMESVPGAALSSLKDSYSLCRIFKKPIQVQAKPKEEDHEQAEEGAKKEWFSEEQVLREDSSTGTEISREIETMDEKLLNHASSSDVTQGTCTPTDRNKTCMADDFQAQFSCDEANSAANSYPMGILGYPSNLFQDIEIPMYGMHYQLPQTPLVLEDFPQMNLTESMKPEMTEECMVYDRYRDCMNGTLEEIISLCSSQDHSVAFPMLQ* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3991 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 174 - -
Lja3g3991 340 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Lja3g3991 340 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Lja3g3991 340 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Lja3g3991 340 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Lja3g3991 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3991 Lja-Chr3 78728850 78732512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3991 1 325 NAC Transcription Factor Family AT1G54330 53.049 3.55e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g3991 NAM 8.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3991 - - gmx:100808325 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3991 3 78728850 78732512 Lja3g3991 3 78728850 78732512 ECH