Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3988 ATGGGGCACCGTTGCTGCAGCAAGCAGAAGATCAAAAGAGGATTGTGGTCTCCTGAAGAAGATGAAAAGCTTCTAAAATATATCACCATTCATGGCCATAAAAGTTGGAGTTCTGTTCCAAAGTTAGCAGGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAATTATCTGAGGCCTGATCTCAAGAGGGGCACCTTCACTGCAGAAGAAGAGCAGATTATAATTGACATTCATAGAATTCTGGGAAACAGATGGGCCCAAATAGCCAAGCATCTCCCTGGAAGAACAGATAATGAGGTCAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATCTCACAAGGGTTAGACCCACAAACCCACAATCTCCTCGCTTCTCATAAGAGAAGCTCAAGAAATATCATCTCTCATAATAACAATCAAAATTCCAATTCCATTTTCATGTTGAGTTCACAGAATATACCAAATGCTGATCCCTTGGGAATTAGTCAATATTTTTCATCACTACCTAAAGCTCCACCAAACATTGTTCAAACTCCCTCTGCCATTGCCTCCTCTGAATACCAAACACCCAACAATATTCTTTCAAACTACAAAACATTAGATTTTGCTAATGAGCTATTATTAACAGAGAATTGTTTTCCTTCCTGCCCAAATGTTTGGGTTTCAAGATTTGATGATGCTGAGGATTTTGGAGTTCAAACAACACTGGAAGAAGGGACACGAGTGCAGGTGCAGCAAGAGAAGGAAAAGAGTTGTGTTGAGAAGGGAATTGATGTCAGGGAAGATAATTATAAGGACAGCCTTGAAATGAGTTCTTTTGAGAGTTGTAACTTTGATTTTGGGTTGTTGGAGAGTGTGCTTGCGTCTGAGTTTATCTCTGATCACGATGTCAACTATATGGATGAATTTGCATGGAACTTTTAG 939 0.3972 MGHRCCSKQKIKRGLWSPEEDEKLLKYITIHGHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGTFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLASHKRSSRNIISHNNNQNSNSIFMLSSQNIPNADPLGISQYFSSLPKAPPNIVQTPSAIASSEYQTPNNILSNYKTLDFANELLLTENCFPSCPNVWVSRFDDAEDFGVQTTLEEGTRVQVQQEKEKSCVEKGIDVREDNYKDSLEMSSFESCNFDFGLLESVLASEFISDHDVNYMDEFAWNF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3988 312 CDD SANT 68 108 IPR001005 -
Lja3g3988 312 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lja3g3988 312 PANTHER MYB DOMAIN PROTEIN 55 1 299 - -
Lja3g3988 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lja3g3988 312 SMART sant 12 62 IPR001005 -
Lja3g3988 312 SMART sant 65 113 IPR001005 -
Lja3g3988 312 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lja3g3988 312 PANTHER BNAC05G40480D PROTEIN 1 299 - -
Lja3g3988 312 Gene3D - 10 66 - -
Lja3g3988 312 CDD SANT 16 60 IPR001005 -
Lja3g3988 312 Gene3D - 67 148 - -
Lja3g3988 312 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lja3g3988 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lja3g3988 312 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Lja3g3988 312 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3988 Lja-Chr3 78705793 78707454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3988 1 133 MYB Transcription Factor Family AT3G12720 87.970 4.04e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g3988 Myb_DNA-binding 5.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3988 3 78705793 78707454 Lja3g3988 3 78705793 78707454 ECH