Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3985 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCAGGTCTTGTTCTCACAACAGACCCAAAACCTCGCCTCCGCTGGACCGTCGAGCTCCATGAACGCTTTGTTGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACTCCTAAAACCATCATGAGGGTGATGGGTGTGAAGGGTCTCACCCTTTACCACCTTAAGAGCCACCTTCAGAAATTCAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAACACTGCCTCCTCTTCTGCCATGATCGGCCGCAACATGAATGAGATGCAAATTGAGGTGCAGAGAAGACTGCATGAACAGCTTGAGGTCCAGAAGCATCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCATATCAAACACTTGCAGGTGAAAACATGGCCTCTGCAGCCACCAACTTGAAGGGTATAGGACCTCAAACCATCCCTGACATGGGAATCATGAAAGAGTTTGGTTCCCCTCTTGGTTTCTCTTTTCAAGATCTTGACCTTTATGGAGGTGGTGGTGGTGACCAGCTTGAGCTTCAGCAAAACATGGAGAAGCCACCCCTTGATGGGTTCATGCCAATGAATCATGAGAACCTGTGTCTGGGGAAAAAGAGGCCTAACCCTTATAGTGGTAACAATGGGAAGAGCCCTTTGATGTGGAGTGATGATCTCAGGCTTCAAGATTTGGGATCATGCCTTCAAGATGATCCTTTCAAAGGTGATCATCATCACCAGATTCAGATTGCACCACCATCATTGGATAGAGGCACTGAAATGGATCCAATGTCAGAGATCTATGACTCAAAGCCTGAAGAGAAGAAATTTGATGCATCAATGAAACTTGAAAGGCCATCACCAAGAAGAGCACCACTTGGAGAAAGGATGAGTCCTATGATCACTACTGGTACCATGGCTCAAGGTAGAAGCTCACCATTTGGCTGA 1077 0.4726 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGIGPQTIPDMGIMKEFGSPLGFSFQDLDLYGGGGGDQLELQQNMEKPPLDGFMPMNHENLCLGKKRPNPYSGNNGKSPLMWSDDLRLQDLGSCLQDDPFKGDHHHQIQIAPPSLDRGTEMDPMSEIYDSKPEEKKFDASMKLERPSPRRAPLGERMSPMITTGTMAQGRSSPFG* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3985 358 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Lja3g3985 358 MobiDBLite consensus disorder prediction 344 358 - -
Lja3g3985 358 Gene3D - 34 92 - -
Lja3g3985 358 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g3985 358 MobiDBLite consensus disorder prediction 310 334 - -
Lja3g3985 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Lja3g3985 358 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Lja3g3985 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 315 IPR044848 GO:0003700
Lja3g3985 358 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Lja3g3985 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 315 - -
Lja3g3985 358 MobiDBLite consensus disorder prediction 310 358 - -
Lja3g3985 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3985 Lja-Chr3 78672561 78675027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3985 4 358 G2-like Transcription Factor Family AT1G79430 57.568 2.93e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja3g3985 Myb_DNA-binding 1.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3985 3 78672561 78675027 Lja3g3985 3 78672561 78675027 ECH