Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3984 ATGATTAGTCATATGAACATGGCACTGCGATCCCCGATGCTTCTCTCTCGCTATTCCCATCTCCTCTCTGCTAAACTGCAGATTCAAATGCACCTCTCCACTTCTCCCCTCACTCGCAAGATGAGCACGGATGCACGGAGTATTGCCTCTCAGCTTAGTAATTCTGGCCTGTTGAAGACTCAGGGCCTTATTGGAGAGAAATGGAGTGATGCTTATGATGGAAAAACCATTCAGGTTATTAATCCTGCTACTGGTGATTCTATAGCAGATGTTGCATGCATGGGTGGAAGAGAGACGAATGATGCAATTTCCTCTGCCTATGATGCCTTTAGATCATGGAGCAAAATCACTGCTGCTGAGCGAAGCAAATATTTGAGGAAATGGTATGACTTGCTAATGGCCCATAAAGAAGAGCTAGCACAACTTATAACCTTGGAGCAAGGCAAGCCTCTTAAAGAGTCTCTGGGCGAGGTAAGCTATGGGGCTGGCTTTATTGAGTTTGCATCTGAGGAGGCAAAGCGTATATATGGGGATATCATTCCTGCGCCTCTATCTGATAGGCGGTTATTTGTTTTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACCCGAAAGGTTGGCCCAGCCCTTGCATGTGGCTGTACAGCAGTCATAAAGCCCTCTGAAATCACGCCTCTCACTGCTTTAGCTGCAGCAGAACTCGCTATTCAAGCTGGAATCCCAGCGGGTGTACTGAATGTGGTTATGGGAAATGCTCCTGATATTGGCGATGCTTTTCTTGCAAGTCCACAGGTACGGAAAATCACATTCACTGGCTCGACAGCTGTTGGAAAGAAATTGATGGCAGGTTCTGCAGAGACGGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCCCCTTGCATAGTTTTTGATGATGCTGACCTAGACATTGCAGTAAAAGGAACCCTTGCAGCAAAGTTCCGTAATAGTGGACAGACATGCATTTGTGCAAATAGAATTATCGTGCAAGAAGGTATATATGAGAAATTTGCAAATGCTTTGCTTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGACGGTGTTGTTCAGGGTCCTCTGATCAATGAAGCTGCTGTAAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTATTGGGGGTAAAAGACATAGTCTTGGACTCACTTTTTATGAACCAACCATCGTCAGTGATGTCCACAATGATATGCGCATATCTAGAGAAGAAGCATTTGGACCTGTTGCGCCCCTTTTGAGGTTCAAAACTGAAGAGGATGCTATCAGAATTGCCAACGACACTAACGCAGGTTTGGGTTCATATGTATTTACAAACAGTATCCAGCGATCATGGCGCGTTGCTGAGGCTCTTGAATATGGACTTGTGGGTGTTAATGAAGCAGGAATTTCAACCGAGGTGGCTCCATTCGGTGGTTTTAAACAATCTGGCCTAGGAAGAGAAGGATCCAAATATGGGATGGATGAATATTTGGAGATCAAGTATGTCTGCTTGGGAAACATGAATAAAGAGTGA 1608 0.444 MISHMNMALRSPMLLSRYSHLLSAKLQIQMHLSTSPLTRKMSTDARSIASQLSNSGLLKTQGLIGEKWSDAYDGKTIQVINPATGDSIADVACMGGRETNDAISSAYDAFRSWSKITAAERSKYLRKWYDLLMAHKEELAQLITLEQGKPLKESLGEVSYGAGFIEFASEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTAVIKPSEITPLTALAAAELAIQAGIPAGVLNVVMGNAPDIGDAFLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDIAVKGTLAAKFRNSGQTCICANRIIVQEGIYEKFANALLDAVQNMKVGDGFSDGVVQGPLINEAAVKKVESLIHDATSKGAKVIIGGKRHSLGLTFYEPTIVSDVHNDMRISREEAFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEAGISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMNKE* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3984 535 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 532 - -
Lja3g3984 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 331 342 IPR016160 GO:0016491
Lja3g3984 535 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 79 525 IPR010102 GO:0009013|GO:0009450
Lja3g3984 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 307 496 IPR016163 GO:0016620
Lja3g3984 535 Pfam Aldehyde dehydrogenase family 70 527 IPR015590 GO:0016491
Lja3g3984 535 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 532 - -
Lja3g3984 535 CDD ALDH_F5_SSADH_GabD 79 529 - -
Lja3g3984 535 SUPERFAMILY ALDH-like 47 530 IPR016161 GO:0016491
Lja3g3984 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 303 310 IPR029510 GO:0016491
Lja3g3984 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 521 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3984 Lja-Chr3 78638755 78653239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3984 32 535 Aldehyde Dehydrogenase Gene Family AT1G79440 78.175 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3984 K17761 - gmx:100808318 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3984 3 78638755 78653239 Lja3g3984 3 78638755 78653239 ECH