Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3983 ATGCATAATAGTGGCAGAAGAAAACAACCTAAGCCTATTACTAGAGTGGGTTGCCTTGCTAGAATTCGATTTCGTTGTTTTTCTAGCAGTAAAAGGTGGAAAGTGGTTTTTTTTTGCGATGAACACAATCACCCATTAACACCATATAAGCATGTTCATTTGATTCCAAAATTCCGGCAATTGAGTGAAGGGGACAAAGCTCAAGCAGAAGGTATGAACCTATTTGGTAAATACAGGCACAATGAGTTGGAATCTGATTTTAAGTCTTCTTATGGTGAGCCTGTTATGACAACAGCACTTAGTGGCATTGAGTATGGAGCTGCCAAAATATTAACAAGGAGCATGTTTTGGGAAGTCAAGGGTCAAATTGAGGATGCCCTGGGGCTAAATGTGGAGCGTTCTGAGGTGGCCAATATTGTGATGATGAAAATGAGAAAAATTAGCAATCGCAGAAAAGAATATATTGTTGTTTATGATAAGAACCAGAAAAAGTTTGTATGTGAATGTGGTTATTTTGAGTTTTATGGCATCCCTTGTTCTCATATAATAGCTGGGATGAGAAGTGAGTATATTGATGAATTTCCAAGCAATCTAGTTTCTAAGAGGTGGTTGAAAACAGCCAAGTCTGCTCATGTGTATTCAATTTCAGAGCCTAGTATTCATTCACAGAATATGAAATTGTTGCGAAAAGGAGCTATGTCTGCCGCATGCAACTATCTCGCAGAAATAGCATGCGAAAAGGATGATGATTTTTCAAGTGTAATGGAAGACATTTATAAGCTGTTGAGGGATGTTCAGAAGAGTCGCAAACCGGGTTGTACAACAAAGAGTGCAGCCTTTAATGTGGGTGATCCAACTGTTATACAGGGTAGAGGTGCCCCCAAGAAGACCAGAACTGTCACCAAGAGAAGGCATTGCTCAAATTGCAGGGGTATTGGACACACGATTCGTACGTGCCCGGTTTTGCTTTATCCTGATCAAGTCAATAACAGTGAAACAGGTGAATCTGCAAGTAAAGGAATTGAGGACAGCACAGACGACGAGACAAACGTTGGCAGCGTAGATCGGCAGAATAAGGGGGCTTCGGTGGCAAGTAAACTTAAATCGCAGCAACGGAAGCAGGGAAATGACTCCTCATCCACCCAAAACAAGCGTTCAAATCAGAACACGGTGTCGACAAAACAAAATAAGCGTAAATCTAAGCAACGAGAAGTCCCAGTCATGATTCATTCAAGCCAAGTATCTGTGAATGAAGTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGAATCTGTGAATCAGGTACAGGTTTATAACATGGAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGACTAATGGAGTTCAGGTGTTTCCACAGTTTATACAGCACCAAAACGTCCAGGTTCCTTACCAAGGAGTTCAGATGCAAACTCTATTTCAAGCTGGACCTTCTGGCTTACTCCCGACATTTTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCTAGTTTAGGAAATAATTGA 1656 0.4161 MHNSGRRKQPKPITRVGCLARIRFRCFSSSKRWKVVFFCDEHNHPLTPYKHVHLIPKFRQLSEGDKAQAEGMNLFGKYRHNELESDFKSSYGEPVMTTALSGIEYGAAKILTRSMFWEVKGQIEDALGLNVERSEVANIVMMKMRKISNRRKEYIVVYDKNQKKFVCECGYFEFYGIPCSHIIAGMRSEYIDEFPSNLVSKRWLKTAKSAHVYSISEPSIHSQNMKLLRKGAMSAACNYLAEIACEKDDDFSSVMEDIYKLLRDVQKSRKPGCTTKSAAFNVGDPTVIQGRGAPKKTRTVTKRRHCSNCRGIGHTIRTCPVLLYPDQVNNSETGESASKGIEDSTDDETNVGSVDRQNKGASVASKLKSQQRKQGNDSSSTQNKRSNQNTVSTKQNKRKSKQREVPVMIHSSQVSVNEVTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQESVNQVQVYNMEPIVQQVHYPVVRASAGLPFLQPTYAVNMTNGVQVFPQFIQHQNVQVPYQGVQMQTLFQAGPSGLLPTFSSTLAAVDRRHNRNSSLGNN* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3983 551 MobiDBLite consensus disorder prediction 406 432 - -
Lja3g3983 551 MobiDBLite consensus disorder prediction 354 395 - -
Lja3g3983 551 PANTHER OS04G0354200 PROTEIN 85 280 - -
Lja3g3983 551 SMART 26again6 165 192 IPR006564 GO:0008270
Lja3g3983 551 Pfam SWIM zinc finger 167 184 IPR007527 GO:0008270
Lja3g3983 551 ProSiteProfiles Zinc finger SWIM-type profile. 154 190 IPR007527 GO:0008270
Lja3g3983 551 MobiDBLite consensus disorder prediction 330 432 - -
Lja3g3983 551 MobiDBLite consensus disorder prediction 339 353 - -
Lja3g3983 551 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 85 280 IPR031052 GO:0006355
Lja3g3983 551 Pfam FAR1 DNA-binding domain 4 47 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3983 Lja-Chr3 78608907 78611814 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g3983 FAR1 7.3e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3983 - - lja:Lj3g3v0948310.1 283.108