Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3980 ATGTATACAAGTATACAACTACGTACCCATGGACTCTATGCATCACTGCTTGCATTTGCAACATCAAGAACCATTCTCACTCTATCACCTCGATTGCACGAAATAGTAGAGCGAGAAATCACAGATAAAGCACACAACATCTTTGGTCACTGCCTTGATGACACTAAGGAAAGAATCAGGAACATGTTCAACAAGGTTGAGCTTTCTATTTCTTCTTATGATACAGCTTGGGTGGCGATGGTTCCTTCTTCAACTTCGTCCGGTGCCCCGCTTTTCCCTCAATGCTTAAACTGGTTGTTAGATAGTCAACTCTTTGATGGCTCCTGGGGTCTTCCTGATCGCCATCCATTGTTGATGAATGATGCTCTCTTATCTACTTTAGCATGTATCCTTGCATTAAAGCAATGGGGTATTGGTGAAGATCTAATGGACAAGGGTCTTAAATTTCTTGAGTCAAATATTACCTCAATCAATGATGAGAACCAACACACTCCCATAGGATTTGATCTACTTTTTCCTTCTATGATTGAATATGCACAAAATTTGGGAATCAACCTTCCAATTGGAGCTATAAGCTTGGAAGCAATGATCCGGAAGAGAGAGATAGAGCTCCAAAGAGGCAGTCATAGCAATTCAGAAGGGTGGAGAGCATATCTAGCATATGTTTCAGAAGGAATGTTGAACTCACAGGACTGGAGTGCAATAATGAAGCATCAAAGGAAGAATGGATCTTTGTTTAATTCACCTTCTACAACAGCAGCTGCATTTCAGCACCTTAAGAATGCTGATTGTCTTAGTTACCTCCAATCTGTGTTAGAAAAGTTTGGGAATGCAGTTCCAACAGTTTCTCCTCTGGATATATATGCCCGTCTCTATATGATTGATAATCTTGAAAGGTTGGGCATTGATCATCATTTCAAATCGGAAGTTCGAAGTGTATTGGAAGAAACACACAGATATTGGATGCAAGGAATGGAAGATATTTTCTTAGACCCCACCACCTGTGCAATGGCATTTCGTATGTTGCGTCTCAATGGCTATGATGTATCTTCAGATCCATTTTATCAATATTCTGAAGATAAATTTTCCAATTCCTTGAAAGGGTACTTGAAGGATGTTGGTGCTATTTTAGAGCTATATAGGGCTTCACAAGTCATTATACATCCTGATGAATCAGTTTTGGTGAAACAAAGTTCCTGGACAAGACAGCTTCTGAAGCACTATTCTTCCCCTCATCGTGTATATGCTGATAAACTTCGTAGTCATGTTTACCACGAGGTCAATGAGGCTCTTAATTTTCCTTATCATTCAAATTTGGAGCGTTTGTTAAACAGAAGATCAATAGAGCATTACAATGTAGAAGAAATAAGGATTTTAAAAACATCATACAGATCTTGCAATCTTGCAAACCAAGAAACTCTAAATCTAGCAGTAGAAGACTTCAATATTTTCCAATCAATACATGGTAAAGAGTTCAAGCAACTTGCAAGGTGGTATACTGAGAGCAGGCTTGACAAACTAAAGTTTGCAAGGAGTAAACTGGCCTATAATTGCTTCCTCTGTGCAGCTACTCTATTTTCTCCTGAACTATCTGATGCTCGCATCTCAATGGTGAAAAATGGGGTGCTTGTAACAATTGTTGATGATTTCTTTGATGTTGGAAGTTCTGAAGAAGAGCAAGTGGACCTTATTCAACTAGTTGAGCAGTGGGATGCAGATATCAACACTTTGTGTTGTTCGGAGACAGTTAAGATAATATTTTCTGCGATTCACAGCACAACTTGTGAGATTGGGGAGAAATCAGTTAAGCGGCAAGGACGTAACGTGAAAGATGATGTTATCCGAAATTGGCTGAATTTGATGCGGTCTATGTTTACAGAAGCTGAGTGGTTAAGAAGCAAGTTTGTTCCAACAATTGATGATTATATGCAAAATGCGTTCGTATCATTAGGCTTGGGAGCAATTGTCCTTCCAGCCCTCTATCTCTTAGGACCTAAGCTTTCAAATGAAGTTACTGAAAGTCATGAACTGAATAGTCTGTTTAAGCTCATGAGTACTTGTGGGCGTCTTCTCAATGATATCCGCACATTTAAGAGAGAATCTGAGGAAGGGAAATTGAATGCAGTGACTCTGCATATTGTTCATGGCAATGGAGTTGTTACTGAAGAAGAAGCCATTGACAAGATAAAGGGTATTATTGAGGATAAGAGAAGGGAGCTCCTGAGATTAATTTTGCAGGAAAAAGGAAGTGTAGTTCCTAGAGCTTGCAAGGATTCGTTTTGGAAAATGATGAAAGTGTTGCACCTAGTTTACATGAAGGATGATGGATATACTTCAGAAGAGATGCACTCTAGTGTAAATGCAGTATTGAAAGAGCCAATTGTCCTTGGTGATTTGTTGGTCGATTCTCAGCAGAACCTTAGCCCTCTGTTAAAGCCACAAGTGGTGTGA 2451 0.3941 MYTSIQLRTHGLYASLLAFATSRTILTLSPRLHEIVEREITDKAHNIFGHCLDDTKERIRNMFNKVELSISSYDTAWVAMVPSSTSSGAPLFPQCLNWLLDSQLFDGSWGLPDRHPLLMNDALLSTLACILALKQWGIGEDLMDKGLKFLESNITSINDENQHTPIGFDLLFPSMIEYAQNLGINLPIGAISLEAMIRKREIELQRGSHSNSEGWRAYLAYVSEGMLNSQDWSAIMKHQRKNGSLFNSPSTTAAAFQHLKNADCLSYLQSVLEKFGNAVPTVSPLDIYARLYMIDNLERLGIDHHFKSEVRSVLEETHRYWMQGMEDIFLDPTTCAMAFRMLRLNGYDVSSDPFYQYSEDKFSNSLKGYLKDVGAILELYRASQVIIHPDESVLVKQSSWTRQLLKHYSSPHRVYADKLRSHVYHEVNEALNFPYHSNLERLLNRRSIEHYNVEEIRILKTSYRSCNLANQETLNLAVEDFNIFQSIHGKEFKQLARWYTESRLDKLKFARSKLAYNCFLCAATLFSPELSDARISMVKNGVLVTIVDDFFDVGSSEEEQVDLIQLVEQWDADINTLCCSETVKIIFSAIHSTTCEIGEKSVKRQGRNVKDDVIRNWLNLMRSMFTEAEWLRSKFVPTIDDYMQNAFVSLGLGAIVLPALYLLGPKLSNEVTESHELNSLFKLMSTCGRLLNDIRTFKRESEEGKLNAVTLHIVHGNGVVTEEEAIDKIKGIIEDKRRELLRLILQEKGSVVPRACKDSFWKMMKVLHLVYMKDDGYTSEEMHSSVNAVLKEPIVLGDLLVDSQQNLSPLLKPQVV* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3980 816 Pfam Terpene synthase, N-terminal domain 231 427 IPR001906 GO:0010333|GO:0016829
Lja3g3980 816 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 241 454 IPR008930 -
Lja3g3980 816 Gene3D - 61 481 IPR036965 GO:0010333|GO:0016829
Lja3g3980 816 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 62 792 - -
Lja3g3980 816 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 62 792 - -
Lja3g3980 816 SUPERFAMILY Terpenoid synthases 474 794 IPR008949 -
Lja3g3980 816 Pfam Terpene synthase family, metal binding domain 474 739 IPR005630 GO:0000287|GO:0010333|GO:0016829
Lja3g3980 816 Gene3D - 69 272 - -
Lja3g3980 816 SFLD Terpene Cyclase Like 1 N-term 52 464 - -
Lja3g3980 816 Gene3D Farnesyl Diphosphate Synthase 484 798 IPR008949 -
Lja3g3980 816 CDD Terpene_cyclase_plant_C1 281 793 IPR044814 GO:0010333|GO:0016102
Lja3g3980 816 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 72 263 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3980 Lja-Chr3 78566359 78574580 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3980 K04121 - gmx:100793849 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3980 3 78566359 78574580 Lja3g3980 3 78566359 78574580 ECH