Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3977 ATGAAAGGCAAAGGGAGAAAAAAAATAGAGATAAAAAAAATTATCGAAAAGGTCAAACGTCAAGTAACGTTCTCAAAGCGTTGTAAAGGGCTCTTCAAGAAAGCCAGCGAGTTGTGCACCATTTGCGGTGTAGATCTTGTTATCATCGTCTTCTCTCCTAGCGGGAACGTCTATTCTTTCGGCCACCCTAGCGTGGAGGCTGGCCTCCAAAGGTATCTTTTCCAGGCCCCGCACCCAACCTCTGAAACCATGGTGTACATCTTGGCTCAACAGAATGTTACCGTGCGTGAGCTCCACAGACGACTCTCCTATGTCAACAACCAGTTGGACTCTAGCAAAAAGCATGGCGAGGAGTTGGCCCGCAGGCACAAGGAAACCCATGCTCAGTTCTTGGGGGCTACTCAGGTTGAGGAGATGAACATGTCGCAACTTGAGAAATTTAGGGCGACGTTTTATGAGCTAAAGAATCATGTCACTAGCTGCGGTGCTGATGTTGTTGCTACCAACCCACAACCTCATTAG 522 0.477 MKGKGRKKIEIKKIIEKVKRQVTFSKRCKGLFKKASELCTICGVDLVIIVFSPSGNVYSFGHPSVEAGLQRYLFQAPHPTSETMVYILAQQNVTVRELHRRLSYVNNQLDSSKKHGEELARRHKETHAQFLGATQVEEMNMSQLEKFRATFYELKNHVTSCGADVVATNPQPH* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3977 173 SUPERFAMILY SRF-like 5 83 IPR036879 GO:0003677|GO:0046983
Lja3g3977 173 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Lja3g3977 173 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Lja3g3977 173 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 4 166 - -
Lja3g3977 173 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Lja3g3977 173 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Lja3g3977 173 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Lja3g3977 173 PANTHER MADS BOX PROTEIN 4 166 - -
Lja3g3977 173 Gene3D - 16 83 IPR036879 GO:0003677|GO:0046983
Lja3g3977 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3977 Lja-Chr3 78414411 78414932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3977 2 159 Type I MADS-box Gene Family AT5G60440 43.558 7.57e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja3g3977 SRF-TF 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3977 - - lja:Lj0g3v0161019.1 328.946