Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3967 ATGGAGCAGCCACAACTCCTAGTGGGTGAAAACTTTCCGCTCTTCAAACCCTCCAAAATCCCCGCCGCAACCGCTTCCGCCGCCGCCAATGAAAACCCTAACTCCGCCACCACAAACAACAGCAACAAGCAAAACCTCGACTCCGCCCCTGACGAACCGGCCACCGACGACGCCGCCACGTTCGCCGATCTCGGACTTGCAGACTGGGCGGTGAAAACGTGCAAGGAGCTAGGGATGCGGGCGCCGCGGCGCGTGCAGCAGCAGTGCATCCCGAGGGTCCTGGAAGGCCGGCACGTGCTCGGCATCGACGAGACCGGGAGTGGCAAAACGGCGGCGTTCGCTCTACCGATCCTGCACCGGCTCTCCGAGCACCCGTTTGGCGTGTGCGCTCTGGTGGTGACGCCCACGCGCGAGCTTGCTTTCCAGCTCGCGGAACAGTTTCGCGCGTTCGGGTCCTCCCTCCGCCTCCGCATTGCCGTGGTGGTTGGTGGCATGGACATGCTCAAACAGACGAAGGAGCTTGTCGCGAGGCCTCACATTGTTATCGCCACCCCTGGGAGGATGAAGTTCTTGCTCCAGGATAATCCTGATATTCCTCCTGTTTTCTCTAGGACTAAGTTCCTTGTCTTAGATGAAGCAGATCGAGTCTTGGAAGTTGGTTTTCAAGAGGAATTGAAAATTCTCTTTCAGTGCTTACCAGAAAATCGACAAAACCTGTTCTTTTCTGCAACAACGACAAGTAATCTGCAAAAGTTGCGTGACCGTTTTCAAGATAAGATGTTTGTCTATGAGGCTTATGAAGGTTTTAAAACAGTTGAAACACTTAAGCAACAGGTTATATTCATCCCTAAAAAGGTGAAAGACGTATATTTGGTGCATATGTTGTCTAAAATGGAAGAAATGGGTATTCGATCTGCCATTGTATTTATCTCCACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGACGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTTAGATCACAGGCTCAGAGGATTGAAGCGCTTCATCAGTTTAAATCAGGACAAGTTTCTATACTATTAGCAACTGATGTTGCCAGTCGCGGTTTGGATATTCCTACAGTTGACCTAGTCATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGTGTTGGTCGTACCGCAAGAGCTGGCAGAGGAGGACTTGCATGGAGTCTTGTTACCGAGAGTGATGTTGATCTCGTTCGTGAGATAGAGACTCTTCTTGGAAGGCAACTTGAAATGCTTGAATACAAAGAAAATGAGGTGCTTCCTCTCATCAAAAAGGTTTTCAGTGCTAAGAATGCGGCAGGAATGAGGATGGTGGATGATGGCTTTGAGGAGAAAGCTGTAGAACGGAAAAAACAGAAACGGAAAATGCTAGCAGAGAAAGGGTTGTTAAAGAGCAGAAGTAAAAAGAGAAAAAGGAATAAAGAATTTGCAGAGAAAGGGAAAAAACAGAAAAAAGATGAAGTGGAAGCATTAGCTGATACAGCGTCACTGAAAAAAAAGAGTAAGAAGAAAGTAAATTAG 1572 0.4771 MEQPQLLVGENFPLFKPSKIPAATASAAANENPNSATTNNSNKQNLDSAPDEPATDDAATFADLGLADWAVKTCKELGMRAPRRVQQQCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVCALVVTPTRELAFQLAEQFRAFGSSLRLRIAVVVGGMDMLKQTKELVARPHIVIATPGRMKFLLQDNPDIPPVFSRTKFLVLDEADRVLEVGFQEELKILFQCLPENRQNLFFSATTTSNLQKLRDRFQDKMFVYEAYEGFKTVETLKQQVIFIPKKVKDVYLVHMLSKMEEMGIRSAIVFISTCRDCHRLSLMLDVLDQEAAALYSFRSQAQRIEALHQFKSGQVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLAWSLVTESDVDLVREIETLLGRQLEMLEYKENEVLPLIKKVFSAKNAAGMRMVDDGFEEKAVERKKQKRKMLAEKGLLKSRSKKRKRNKEFAEKGKKQKKDEVEALADTASLKKKSKKKVN* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3967 523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 90 263 IPR014001 -
Lja3g3967 523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 290 437 IPR001650 -
Lja3g3967 523 MobiDBLite consensus disorder prediction 25 49 - -
Lja3g3967 523 Gene3D - 270 522 IPR027417 -
Lja3g3967 523 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 209 217 IPR000629 -
Lja3g3967 523 CDD SF2_C_DEAD 275 407 - -
Lja3g3967 523 MobiDBLite consensus disorder prediction 467 523 - -
Lja3g3967 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 418 IPR027417 -
Lja3g3967 523 SMART helicmild6 317 398 IPR001650 -
Lja3g3967 523 Pfam DEAD/DEAH box helicase 84 252 IPR011545 GO:0003676|GO:0005524
Lja3g3967 523 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 59 87 IPR014014 GO:0003724
Lja3g3967 523 MobiDBLite consensus disorder prediction 481 495 - -
Lja3g3967 523 PANTHER RNA HELICASE 58 490 - -
Lja3g3967 523 SMART ultradead3 78 278 IPR014001 -
Lja3g3967 523 Gene3D - 23 263 IPR027417 -
Lja3g3967 523 MobiDBLite consensus disorder prediction 496 517 - -
Lja3g3967 523 MobiDBLite consensus disorder prediction 23 55 - -
Lja3g3967 523 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 58 490 - -
Lja3g3967 523 CDD DEADc_DDX49 61 264 - -
Lja3g3967 523 Pfam Helicase conserved C-terminal domain 293 398 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3967 Lja-Chr3 78149136 78153958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3967 52 427 Eukaryotic Initiation Factors Gene Family AT3G19760 28.647 1.79e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3967 K14778 - gmx:100798597 758.444