Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3965 ATGCAGAAGCATCAATACAATTCCATTGATCCTAGAAATGAGGAATTCCCTCCTGCGCCACAGTCAGTCGTGCAAGACCATCTTGACGGCATGCATATCAATGCACGGCCTTCTCCCTATAACGTGTCAGACAATAAACCTGTTCATAATTTCTCCATACAGACTGGTGAGGAATTTGCTCTTGAGTTTATGAGAGATAGGGTAAATCTCAGGAAGCCCGCATTTCCAAACGTTGTTGGCGATCCGAATTATGCAGCAGGGTTTATGGAATTGAAAGGTATTTTAGGCCATGCCGGATCTGAAAGTGGGCCAGATATTTCTGTTCTCACAACAAAGATTGAGAAAGTTCCAAAAGAGTTTGACAGAAGGAACTCTTTACACCCAAACACAAGTAACTATGGTTCAGCTCGATCGATTCCTAGAACTTCATCTAATCAAGACAATAACCGAGTTCTTCAAGGTATTACCTCTTCTGGATCTTCTGGCAGCTCATCAATGAAGATGAAGGTTCTATGCAGCTTTGGTGGTAAAATATTGCCACGGCCCGGTGATGGAAAGCTTAGATACGTCGGGGGTGAAACGCGTATTATTAGTATAATGAAGGACATAAGTTGGCAGGAGCTTATGCAGAAAATGTCATCAATTTATAATGAAGCTCATGTAATAAAGTATCAGCTCCCTGGAGAAGACCTTGATGCACTAGTTTCAGTGTCTTCTGATGAGGATCTGCGGAATATGATGGAGGAATGTCATGATCTGCAAAGTCGAAGAGGATCACTAAAGCTTAGGGTGTTTCTGTTCTCTATGAATGATCTGGATGATACTCGGTTTGGTCTAGGCAGCATTGATGGTGATTCTGAAATCCAGTATGTAGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAGCAACTCAATCCTTCATGGTGCAAACAGTTCTAATAACATACGCGAATTGGATGGACAAAATTTTGAGAGGGATGCAAACAGAGTATTTGGTGTCAGCAGTTCAAACTTGAATGGCAATGATAACTCGTCATTGAAAATTCCGGCTTCGAAACCAATGTTACCAACCTCCTCAGGTGCTTATGATGCCTATCCGTTCTTTTATGATGACCAGATCATTCAGCATGGGGGAACTGGTCAATATCCTCTACACCATGGTCTTGACCCTTCTAACCACTCTGCTCCGAATCTTGGAGGGACTCCAGTTTCTGCGCCTACTCGCGGCTTTATTAACCAAGGAGTAGTGTTTGATGGGCAAGCATCCAGTGAGTTGCAATCGCAAATTTCAGATATCCAATCAATGCAGGTAAAAAGAAAGGGTGATAACTTCATTCACACAGGCAATAACTCGGGGAAAGTTTTGTCCTTGGAAGCACCGTATCCTATTCCTTCGCAGCCATTTGAGGGAAGTTTGCAACGCAATTTATCAGAGGTATCAGTCACAGCTGCGGTATCAGAAAATAGGGTTAAGCACCAGCCACCTGAAGATGCCTCTTCATTGGTTAGTACTACACAGATTTCTAAATCCGGTGAAGATGACTTCTACACTACATCGGCCGACGCATTCAGTCATGCTCGTGTTGATGCTGAGTCCAATGTGATTGATTTCAGTTGCCTTGAACCACCTCCACTTCCTAACAGAGTCTATTATTCAGAGATGATTCCCAGGGGGCAGGCAGATTTGCTGAATCGATCTGCAAAGTCAGATGATGCGTATGGTTCTCACTTACTCATGTCAGATTTACTTTCCGAGTTGAACCAGAAGAACTCGGTTACAGAATCCAGTGACATGCTGCACAATGAAAATCTATCAAATCTGAACACAGTGTCTACCTCATCAGCAAAGGCCTTGCACGCAGATAGCCATGCCATTGGTGAAACCAAGGGCTCGGAACATCTGGCACCTTATCAGGTTCTTCCTGTTCAACATAATGAGATTCATTCTTCAAAATTTCCCGGCCCCGATTCGGGTGAGGTTTCTACTAGGCAATCCAATAATGAAACTAATGTCCAACCGTTGCCTTTTGGTTTAAGTGGAAGCACAGGCCAAGATGTTTCTCAAGATTTTCCCTCAGGTGCTAAATCCAAAACTGCTCAAGGTGACATTCTGATTGATATCGAAGACAGGTTTCCCCGTGATTTGCTTTATGATATGTTCTCGAAAGCAATATATCCTGAAGATTCCTCAAACATTGGTCCATTACCAACAGATAGAGCAGGTTTGAGCTTAAACATGGAGAATCATGAGCCAAAACGTTGGTCATATTTTCAAAAGTTGGCCCATGAGGGGATTGATAATGTTTCTCTAATTGATCAGGATAATCCTGGTTTTCCATCTTCTGTAAGAAAAGTACCAGAAGGGGATAGTAAATCTCAGCAATCTGCTCCTCTACCAGCAGATTATGTTTTGACAGGACACAAGGAATCCAACCAAAATTTTGGTGAGGAAAATCAGAAAAACTTACCTGTAACAACTATAACAGAAGCCAATGTTATTCACCCAAACTATGACCATTCCCAACTTGAGGGAAATGAAACTAAGAATGTGGATGCCATAGTGGAAAACATTAGACCACAGGAGTCTAAATATCAGGATGAAAACAATGAAACAAGGAATGTGGGTGTAGCCACACAAGATTCAAGTTTGGGGGAGTTTGACATCACTACTTTGCAGGTTATAAAGAACGAAGATCTTGAAGAACTGAAAGAACTTGGATCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGCGTGGATCAGATGTTGCAATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTCGATCTTCAGAACAAGAGAGACTGACCGTAGAGTTCTGGAGGGAAGCCGACATACTTTCCAAGCTTCACCACCCAAATGTGGTAGCATTTTATGGTGTAGTTCAGGATGGGCCAGGAGAAACGTTAGCCACTGTTGCAGAGTACATGGTGGATGGTTCTCTTAGGCATGTTTTGCTTCGTAAAGATAGGTATCTTGATCGCCGCAAGAGGCTTACAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTACACGCAAAAAATATTGTTCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAGGACCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCCTGTCAAAAATTAAGCGAAACACCCTGGTGACTGGTGGTGTGCGTGGAACTCTACCTTGGATGGCACCGGAGCTGCTGAATGGTAGCAGCAATAAGGTTTCGGAAAAGGTGGATGTGTTCTCTTTTGGCATTGTATTATGGGAGATACTTACTGGTGAGGAGCCATATGCTAATATGCACTATGGTGCAATCATAGGAGGTATTGTGAATAACACATTAAGACCCGCAATCCCCAGTTACTGTGATCTGGAGTGGAGAACGCTAATGGAGCAGTGTTGGTCACCTAATCCCTTGGTCAGGCCATCTTTCACAGAAATCGCTCGCCGCTTGCGCGTGATGTCTGCAGCAGCTACTCAGACCAAAGGACAGGGACACAAGGCATCTAAATGA 3549 0.43 MQKHQYNSIDPRNEEFPPAPQSVVQDHLDGMHINARPSPYNVSDNKPVHNFSIQTGEEFALEFMRDRVNLRKPAFPNVVGDPNYAAGFMELKGILGHAGSESGPDISVLTTKIEKVPKEFDRRNSLHPNTSNYGSARSIPRTSSNQDNNRVLQGITSSGSSGSSSMKMKVLCSFGGKILPRPGDGKLRYVGGETRIISIMKDISWQELMQKMSSIYNEAHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQSRRGSLKLRVFLFSMNDLDDTRFGLGSIDGDSEIQYVVAVNGMDLGSRSNSILHGANSSNNIRELDGQNFERDANRVFGVSSSNLNGNDNSSLKIPASKPMLPTSSGAYDAYPFFYDDQIIQHGGTGQYPLHHGLDPSNHSAPNLGGTPVSAPTRGFINQGVVFDGQASSELQSQISDIQSMQVKRKGDNFIHTGNNSGKVLSLEAPYPIPSQPFEGSLQRNLSEVSVTAAVSENRVKHQPPEDASSLVSTTQISKSGEDDFYTTSADAFSHARVDAESNVIDFSCLEPPPLPNRVYYSEMIPRGQADLLNRSAKSDDAYGSHLLMSDLLSELNQKNSVTESSDMLHNENLSNLNTVSTSSAKALHADSHAIGETKGSEHLAPYQVLPVQHNEIHSSKFPGPDSGEVSTRQSNNETNVQPLPFGLSGSTGQDVSQDFPSGAKSKTAQGDILIDIEDRFPRDLLYDMFSKAIYPEDSSNIGPLPTDRAGLSLNMENHEPKRWSYFQKLAHEGIDNVSLIDQDNPGFPSSVRKVPEGDSKSQQSAPLPADYVLTGHKESNQNFGEENQKNLPVTTITEANVIHPNYDHSQLEGNETKNVDAIVENIRPQESKYQDENNETRNVGVATQDSSLGEFDITTLQVIKNEDLEELKELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGETLATVAEYMVDGSLRHVLLRKDRYLDRRKRLTIAMDAAFGMEYLHAKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPAIPSYCDLEWRTLMEQCWSPNPLVRPSFTEIARRLRVMSAAATQTKGQGHKASK* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3965 1182 PANTHER SERINE-THREONINE PROTEIN KINASE 83 626 - -
Lja3g3965 1182 MobiDBLite consensus disorder prediction 771 798 - -
Lja3g3965 1182 SUPERFAMILY CAD & PB1 domains 184 273 - -
Lja3g3965 1182 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 83 626 - -
Lja3g3965 1182 MobiDBLite consensus disorder prediction 122 165 - -
Lja3g3965 1182 CDD STKc_MAP3K-like 906 1163 - -
Lja3g3965 1182 PANTHER SERINE-THREONINE PROTEIN KINASE 628 1182 - -
Lja3g3965 1182 SUPERFAMILY Protein kinase-like (PK-like) 891 1162 IPR011009 -
Lja3g3965 1182 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 628 1182 - -
Lja3g3965 1182 Gene3D Phosphorylase Kinase; domain 1 893 987 - -
Lja3g3965 1182 Gene3D Transferase(Phosphotransferase) domain 1 988 1182 - -
Lja3g3965 1182 PRINTS Tyrosine kinase catalytic domain signature 1134 1156 IPR001245 GO:0004672|GO:0006468
Lja3g3965 1182 PRINTS Tyrosine kinase catalytic domain signature 1019 1037 IPR001245 GO:0004672|GO:0006468
Lja3g3965 1182 PRINTS Tyrosine kinase catalytic domain signature 982 995 IPR001245 GO:0004672|GO:0006468
Lja3g3965 1182 PRINTS Tyrosine kinase catalytic domain signature 1090 1112 IPR001245 GO:0004672|GO:0006468
Lja3g3965 1182 MobiDBLite consensus disorder prediction 656 696 - -
Lja3g3965 1182 ProSiteProfiles Protein kinase domain profile. 900 1165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3965 1182 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g3965 1182 SMART serkin_6 900 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3965 1182 Gene3D - 186 268 - -
Lja3g3965 1182 CDD PB1_UP2 171 267 - -
Lja3g3965 1182 Pfam PB1 domain 184 265 IPR000270 GO:0005515
Lja3g3965 1182 MobiDBLite consensus disorder prediction 126 165 - -
Lja3g3965 1182 ProSitePatterns Protein kinases ATP-binding region signature. 906 931 IPR017441 GO:0005524
Lja3g3965 1182 ProSiteProfiles PB1 domain profile. 167 267 IPR000270 GO:0005515
Lja3g3965 1182 MobiDBLite consensus disorder prediction 648 698 - -
Lja3g3965 1182 Pfam Protein tyrosine and serine/threonine kinase 901 1163 IPR001245 GO:0004672|GO:0006468
Lja3g3965 1182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1025 1037 IPR008271 GO:0004672|GO:0006468
Lja3g3965 1182 SMART PB1_new 182 267 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3965 Lja-Chr3 78136167 78143597 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3965 7 1092 MAP Kinase Kinase Kinase AT1G79570 45.493 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lja3g3965 PK_Tyr_Ser-Thr 4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3965 - - gmx:100799118 1748.41