Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3964 ATGGATCCTAGAAATGAATACCAGCCTGGATCACAGTCAATTGTGCACGACTATCTGGATGGCCTTCATACTAGTAGAAGACCAACTGAACCCAATACATCAGAAGTTAAACCTGTACTTCATTACTCCATGCAGACGGGTGAGGAATTTTCTCTTGAATTTATGAGAGATAAGGTGAATCTCGGGAAGCCTGTTTATTCCAATGTCGGTGATTCCAATTATACAACAGGCTATATGGAACTGAAAGGCATTTTAGGCATCAGTCATGCAGGATCTGAGAGTGGATCAGACATTTCTATGCTATCAAAATATCCAAAAGAGTTTGACAGAAGCAATTATGGTTCAATTCGTTCAATACCAAGAACTTCACTGGATCCGGACAATAGACAGTTTGTGCATAGTTATGGCTCTTCTGGAGGCTATGGTTACTCAACAATGATGATGAAATTTCTTTGCAGCTTTGGTGGTAGAATACTGCCACGGCCAAGTGATGGAATGCTGAGGTATGTTGGAGGCCAAACACGTATTCTTCGTTTAAGAAAAGACATATCTTGGCAGGAGCTCATGCAGAAAGCTTTCCTCATCTATAATCAAGTTCACGCAATCAAATATCAGCTCCCAGGGGAAGAACTTGATGCTTTGGTATCTGTTTCATGTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCATCTACTAGATAGAGAAGGATCGCAAAAGCTTAGGATGTTTTTGTTTTCAATAAGTGATTTGGAGGATGCTCAATTTGGTCTCAGCAGCATGGGTAATGATTCTGAGATCCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGAATCAACAAATAACTCAAATGTGATTGGTGTTGGCTTTTCAGCAAGTGATGTAAATGAATTGGACTGGCAAAATACTGACAGGGAGGCTAACAGAGTTGCTGTAGAATCCACAAGTGCCGTCAATGCTCCCGTGCCAAGCAATTTCAACTCATCAATGGCCACTCAGTTTCCGCAACCACAGCTACCACCTTCCTCAAATTCATTTGAAACTTATCCACTGTTTTACGGTGATCCAATGATGCACCATGGGGAACCTGGTGGTCAATATCTTATTCATCATGGTCTTAATCCTTATCATAGACCTGTTATTGGAGACACTCCTATTATAATGCCTCCTCATATGCTGATTAATCAACGAGGGGTTTTGAATGAGGGCCATCCACCTAGTGGATTACAAGGACAAAATTCAGAAATACCAGCAACATTGGTGAGAAAGATGGATGATAGTTCAACTCAACAAGGAAGTGACCCTGGGAAGGTTTTACCCTCAGAAACTCAATCAGCTCCTGCACAACTGTTTGATGGTTACTTAAAAAATAATTGTCCTGAAGCATCAGTTGTTCCGGAAGGGTATTCAATACCTCCAACAAAAATGGACCCGCTCCGAGATTATGAAGAGGTTTCTTCTACATCTAGCAGCACATTTGGTCCTGGTTATGTTGATCCCCCCTCTAATAAAGTTGACTGGAGTTGTCTTCACCCTCCTCCTGTTCCTAGAAGAGTTTACTATTCAGAAAGAATTCCTAGGGAGCAAGTAGAATTGCTGAATCGGTCCTCAAAGTCGGATGATGCACACAATTCTCAGTTTCATGTTTCAGATTTACTTTCTGATACCAACCCACCGGAGTCTGTAACAGAATCCAGTGGAAACTTGCATGATGGAAATCTGTCTAATTTAACTGAGGAAACAGAGACTTATTTTAAAGATAATAAATCCGTCCTTGATGAGACAAAAGAAAGTAAAACAGACTTTCCTACCTTGCACCAGGTTTCTTCTGTTAGGCACCATGATGATCCCGCATCCTATCTTCCAGATGTTGATTGGGGGGATACCTCTGTGAAAGAATCTAATGACGCTTCTAACATGCAAGCACCACCTGTTCCTTTGAATGGGTATACAACTACAAAAGATGATTCTCAACATTTTCCGTCAAATGTCGTTTACAAACAAGCACAAGGTGACATTCTTATTGATATTAATGATAGATTCCCACGTGATTTGCTAACTGATATCTTCTCTAAAGCAATACTAGAAGAAGATCCCTATGGTGTACATCCATTGGCCTCAGATGGAGGGGGCCTGAGCATAAACATGGAAAATCATGATCCTAAACGGTGGTCTTATTTTCACAAATTGGCTCAAGATGGGATTGGTAATGTGTCTCTTCTCGACCAGGATCATCTTGGTTTTTCACCTGCAACAGGAAAAGTTGTCGGGGATAATGGAGCTCAACATGTTAGACCTTTAACAACTGATGAAGTCTCTCTAAACCAGGCAGAGTCCCACTTCAATTTAGGTGAAGAAAATCAGGAAGATGTACATGGAAGGATTGGAACAGAAATCCCTGTACCGGGGTCAAATTATGAACATCCCCAAGTAAATGACACTGACAGTGTGCAATTTGATGCTATGATGGAAAACTTAAGAGCACGAGATTCAGAATATGAGGTTGGTAAGTTTGAAACAAGGAGTACTAGTCTACCCCCTCTTGATCCTTCTTTAGGAGATCTTGATACAAGTTCCTTGCAGCTCATAAAGAATGAAGATCTTGAAGAGCTGAAGGAACTGGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGCGAGGAACAGATGTTGCAATTAAAAGGATAAAGAAAACCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTTGAATTTTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCGTTTTATGGTGTGGTGCAGGATGGACCAGGAGGAACAATGGCCACTGTTACTGAGTATATGGTGAATGGTTCCCTCAGACATGTATTGCTTCGCAATGATAGGTATCTTGATCGTCGCAAGAGACTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTGAACTTGAAAGATCCTTCACGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAACGAAATACCTTGGTCTCTGGTGGCGTGCGGGGAACTCTACCATGGATGGCTCCAGAACTGCTTAATGGTAGTAGTAACAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTACTATGGGAGATTCTTACCGGGGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTGAATAACACATTAAGGCCAACAATCCCAAATTATTGTGACCTTGAATGGAGAACACTAATGGAGCAATGTTGGGCACCAAATCCTGCAGCTAGGCCATCCTTCACAGAAATAGCTAGCCGATTACGTGTGATGTCTGCAGCAGCTAGAGAAAGCAAAGCACATGGCCACAAAGCATCACCTAAATGA 3462 0.4157 MDPRNEYQPGSQSIVHDYLDGLHTSRRPTEPNTSEVKPVLHYSMQTGEEFSLEFMRDKVNLGKPVYSNVGDSNYTTGYMELKGILGISHAGSESGSDISMLSKYPKEFDRSNYGSIRSIPRTSLDPDNRQFVHSYGSSGGYGYSTMMMKFLCSFGGRILPRPSDGMLRYVGGQTRILRLRKDISWQELMQKAFLIYNQVHAIKYQLPGEELDALVSVSCDEDLQNMMEECNHLLDREGSQKLRMFLFSISDLEDAQFGLSSMGNDSEIQYVVAVNGMDLESTNNSNVIGVGFSASDVNELDWQNTDREANRVAVESTSAVNAPVPSNFNSSMATQFPQPQLPPSSNSFETYPLFYGDPMMHHGEPGGQYLIHHGLNPYHRPVIGDTPIIMPPHMLINQRGVLNEGHPPSGLQGQNSEIPATLVRKMDDSSTQQGSDPGKVLPSETQSAPAQLFDGYLKNNCPEASVVPEGYSIPPTKMDPLRDYEEVSSTSSSTFGPGYVDPPSNKVDWSCLHPPPVPRRVYYSERIPREQVELLNRSSKSDDAHNSQFHVSDLLSDTNPPESVTESSGNLHDGNLSNLTEETETYFKDNKSVLDETKESKTDFPTLHQVSSVRHHDDPASYLPDVDWGDTSVKESNDASNMQAPPVPLNGYTTTKDDSQHFPSNVVYKQAQGDILIDINDRFPRDLLTDIFSKAILEEDPYGVHPLASDGGGLSINMENHDPKRWSYFHKLAQDGIGNVSLLDQDHLGFSPATGKVVGDNGAQHVRPLTTDEVSLNQAESHFNLGEENQEDVHGRIGTEIPVPGSNYEHPQVNDTDSVQFDAMMENLRARDSEYEVGKFETRSTSLPPLDPSLGDLDTSSLQLIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKTCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVNGSLRHVLLRNDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPSRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDLEWRTLMEQCWAPNPAARPSFTEIASRLRVMSAAARESKAHGHKASPK* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3964 1153 SMART serkin_6 870 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3964 1153 SMART PB1_new 162 249 IPR000270 GO:0005515
Lja3g3964 1153 ProSiteProfiles Protein kinase domain profile. 870 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3964 1153 Pfam PB1 domain 167 247 IPR000270 GO:0005515
Lja3g3964 1153 CDD PB1_UP2 151 247 - -
Lja3g3964 1153 PANTHER SERINE-THREONINE PROTEIN KINASE 69 583 - -
Lja3g3964 1153 PRINTS Tyrosine kinase catalytic domain signature 1104 1126 IPR001245 GO:0004672|GO:0006468
Lja3g3964 1153 PRINTS Tyrosine kinase catalytic domain signature 1060 1082 IPR001245 GO:0004672|GO:0006468
Lja3g3964 1153 PRINTS Tyrosine kinase catalytic domain signature 952 965 IPR001245 GO:0004672|GO:0006468
Lja3g3964 1153 PRINTS Tyrosine kinase catalytic domain signature 989 1007 IPR001245 GO:0004672|GO:0006468
Lja3g3964 1153 Gene3D Transferase(Phosphotransferase) domain 1 958 1151 - -
Lja3g3964 1153 SUPERFAMILY Protein kinase-like (PK-like) 855 1132 IPR011009 -
Lja3g3964 1153 MobiDBLite consensus disorder prediction 424 445 - -
Lja3g3964 1153 ProSitePatterns Protein kinases ATP-binding region signature. 876 901 IPR017441 GO:0005524
Lja3g3964 1153 Gene3D - 168 249 - -
Lja3g3964 1153 CDD STKc_MAP3K-like 876 1133 - -
Lja3g3964 1153 SUPERFAMILY CAD & PB1 domains 163 251 - -
Lja3g3964 1153 MobiDBLite consensus disorder prediction 552 581 - -
Lja3g3964 1153 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 586 1151 - -
Lja3g3964 1153 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 69 583 - -
Lja3g3964 1153 PANTHER SERINE-THREONINE PROTEIN KINASE 586 1151 - -
Lja3g3964 1153 Gene3D Phosphorylase Kinase; domain 1 863 957 - -
Lja3g3964 1153 Pfam Protein tyrosine and serine/threonine kinase 871 1133 IPR001245 GO:0004672|GO:0006468
Lja3g3964 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3964 Lja-Chr3 78124765 78133299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3964 31 1151 MAP Kinase Kinase Kinase AT1G16270 49.179 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lja3g3964 PK_Tyr_Ser-Thr 3.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3964 - - gmx:100816522 1515.36