Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3958 ATGGCTGCTGCACTAAGCACATACTACAACAACTGGGACACTCTTCAGACACCCAATTTTGAAATCAGCAGCAGTTTCCTTGAAGAACCAACACCTGAAGAACTAGCACTAGTAGCACCACACTACTTCCCACACCACTTTGCCTATTCAGATGAAACTTTCTTCAACCTTCCAAACAATTCATATTTAACTGATTACCCAACCAACAATTTTCTCTATCCAGAGATTAACAATCCTTCTCAACTCCTTCCTTTCACTTCATTTCATGACCAACAACCCTTCATTTCACTCAATGAGATTTTCCCTACTGAACATCAAGACCTTCCATGCCCAAAACGCCAGAAATTCGAACAAGAGGCTATGCATATGCCATGCAATTATGTTGTGCCTAACTATTGCTTCCAAACAGAGGATCAATTCTCTGCTCTGCTGCAACATGAGGTAATTCTTCCACCTGAACATAGTGGTACTAATTTCGTTGTGGGAAGTAACTTTGAGAAGAAGGTAAAGGAGGAGAGAACAGTTTCGGCGCAGAGCGTCGCGGCGAGAGAAAGGAGAAGGAAAATCACTGAGAAGACTCAAGAGCTTGGCAAGTTGGTTCCTGGTGGGCCTAAGATGAACACTGCTGAGATGCTGCATGCTGCTTCCAAATATGTCAAGTTCCTTCAAGCACAAGTTCAAATGCTTCAACTCATCAACACACTAGAGGAAGATGATAAGGGAGCACCTCCAAGTGAAGATCAACTACACACACTAGTTGTTTCTCCCTATGTTCAAGAGAAGCTTTACTCGGAGGAAAGGTGTTTAGTTCCAAATGAGTTTGTGACTACTTTGACAAATCATGGTGATATTCGATCAACACCTTCCATCCTTAAAGATCTTAACCAGCTGATTGGGACAGAGATTGACAAGAAAGTAAAGCAAGATTAA 930 0.4204 MAAALSTYYNNWDTLQTPNFEISSSFLEEPTPEELALVAPHYFPHHFAYSDETFFNLPNNSYLTDYPTNNFLYPEINNPSQLLPFTSFHDQQPFISLNEIFPTEHQDLPCPKRQKFEQEAMHMPCNYVVPNYCFQTEDQFSALLQHEVILPPEHSGTNFVVGSNFEKKVKEERTVSAQSVAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAASKYVKFLQAQVQMLQLINTLEEDDKGAPPSEDQLHTLVVSPYVQEKLYSEERCLVPNEFVTTLTNHGDIRSTPSILKDLNQLIGTEIDKKVKQD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3958 309 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 4 294 - -
Lja3g3958 309 CDD bHLH_AtbHLH_like 178 230 IPR045239 -
Lja3g3958 309 SMART finulus 179 228 IPR011598 GO:0046983
Lja3g3958 309 Pfam Helix-loop-helix DNA-binding domain 181 223 IPR011598 GO:0046983
Lja3g3958 309 Gene3D - 170 240 IPR036638 GO:0046983
Lja3g3958 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 232 IPR036638 GO:0046983
Lja3g3958 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Lja3g3958 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3958 Lja-Chr3 77942776 77944777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3958 62 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 37.218 5.55e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g3958 HLH 9.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3958 - - gmx:102665938 246.899