Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3955 ATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCAGATACCATTGACAATGTTAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCTGATCAGCAAAGGCTTATCTTTGCTGGGAAGCAATTAGAGGATGGTCGCACCTTAGCAGACTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTTCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTCAAGACATTGACGGGTAAAACAATCACCCTCGAGGTGGAATCCTCAGACACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCACCAGATCAGCAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGAAGGACCCTCGCCGATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTTCTGCGATTGAGAGGCGGTATGCAGATTTTTGTTAAGACCTTGACAGGGAAGACCATCACTTTGGAGGTGGAGAGTTCTGATACCATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAAGATGGAAGAACCCTTGCTGATTATAACATCCAGAAGGAGTCTACCCTACACTTGGTTCTGCGTCTTCGTGGTGGGATGCAAATCTTTGTTAAGACTTTAACCGGGAAGACCATAACATTGGAGGTTGAGAGTTCTGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTAGGACCCTGGCTGATTACAATATCCAGAAGGAGTCCACCCTGCACTTGGTTTTGCGGCTTCGTGGTGGTATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTGGAAAGCTCCGATACAATTGACAATGTTAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCAGCAGCGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGAACTTTGGCAGATTATAATATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTTCGTGGTGGCTTCTAA 1146 0.4764 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3955 381 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Lja3g3955 381 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lja3g3955 381 Gene3D - 77 152 - -
Lja3g3955 381 Gene3D - 229 305 - -
Lja3g3955 381 Gene3D - 153 228 - -
Lja3g3955 381 Gene3D - 1 76 - -
Lja3g3955 381 Gene3D - 306 381 - -
Lja3g3955 381 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Lja3g3955 381 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Lja3g3955 381 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lja3g3955 381 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Lja3g3955 381 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Lja3g3955 381 PANTHER - 222 380 - -
Lja3g3955 381 PANTHER - 64 233 - -
Lja3g3955 381 PANTHER - 146 306 - -
Lja3g3955 381 PANTHER - 1 156 - -
Lja3g3955 381 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Lja3g3955 381 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Lja3g3955 381 CDD Ubl_ubiquitin 77 152 - -
Lja3g3955 381 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lja3g3955 381 PANTHER UBIQUITIN 64 233 - -
Lja3g3955 381 PANTHER UBIQUITIN 222 380 - -
Lja3g3955 381 PANTHER UBIQUITIN 146 306 - -
Lja3g3955 381 PANTHER UBIQUITIN 1 156 - -
Lja3g3955 381 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Lja3g3955 381 CDD Ubl_ubiquitin 229 304 - -
Lja3g3955 381 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Lja3g3955 381 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Lja3g3955 381 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Lja3g3955 381 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Lja3g3955 381 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lja3g3955 381 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lja3g3955 381 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lja3g3955 381 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lja3g3955 381 SUPERFAMILY Ubiquitin-like 151 228 IPR029071 -
Lja3g3955 381 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Lja3g3955 381 SMART ubq_7 229 300 IPR000626 GO:0005515
Lja3g3955 381 SMART ubq_7 305 376 IPR000626 GO:0005515
Lja3g3955 381 SMART ubq_7 1 72 IPR000626 GO:0005515
Lja3g3955 381 SMART ubq_7 153 224 IPR000626 GO:0005515
Lja3g3955 381 SMART ubq_7 77 148 IPR000626 GO:0005515
Lja3g3955 381 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Lja3g3955 381 CDD Ubl_ubiquitin 1 76 - -
Lja3g3955 381 CDD Ubl_ubiquitin 153 228 - -
Lja3g3955 381 CDD Ubl_ubiquitin 305 380 - -
Lja3g3955 381 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3955 Lja-Chr3 77896525 77898563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3955 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.07e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3955 - K08770 mesc:110613784 736.873