Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3944 ATGGGGAAAGGAAGAGCAACATGCTGTGACAAGACTCAAGTGAAGAGAGGTCCTTGGAGCCCTGAAGAGGATCTTAAGCTCATAGCGTTCATCCAGAAACATGGCCATGAGAATTGGCGTTCTCTTCCCAAACAAGCTGGGCTTCAGAGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTGAGGCCAGATGTGAAGAGAGGAAATTTTACACCAGAGGAACAAGAAACCATAATAAGGCTACATAAATCCTTGGGAAACAAGTGGTCAAAGATTGCATCTCTTTTGCCTGGTAGGACTGACAATGAGATCAAGAACGTGTGGAACACCCACTTAAAGAAAAAATTGGATCCCAAAAATTCAGAGTCAAGTGGAGATGAGTCCAAGCTGCAATCATCAGTAACATCCTCTGCATCTTCTTCATCAGAATCATTTTTCTCAAATGAGGGATCAAATCTTGCAAATACTCCTCCTGTTAATGAGTTTATGGAACAAGCTTCTGAAGTGACAATGACAGACAAAATTGAGCCAGATTCAGAAAAGCAAGTATCCAATGAAGTTAATGGCATCAATGAGAATCTCAAGGAGTCATCAAATTCATTATCTTCTTTAGAGTCAAGTATCTTGAACTCAAGCCAGGACATTATTTCCTACAAGCCAGAACAACAACTAGCTTCTCCATTAATCTATCCAGGACCTTATGATGTTGACAATACATTACAAGAGGTGGATAAACCAAACCATGATCTGGTTGAAATTCCATGGGAATCAGATTATGATATTTGGAGTTTGTTAGATAGCATTGAATCTTTCCCACCAAATGAAGTACCATTGGGGGCCAGTCAGAATCATGATCTTGGAGTAGAGAGTGTTCAAGTTACTGAAGCCATGAAGTGGTCCCATGAATTTGAAGGCAAGGCTGGAGTAGTTGGTGAAACAAATGAGTCAAACAAGGATCAGTTCCTACCAAAGAATTATGCAGTTGAGCCACAAATAGACCCTCCTCAGACATTTCACTTCAATGACATGACAAGCCCAGCAGAATCTGAATTAGACTTTGATTTTATTCAATTATGGCCCTCTTCCCCTTAA 1098 0.4035 MGKGRATCCDKTQVKRGPWSPEEDLKLIAFIQKHGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDVKRGNFTPEEQETIIRLHKSLGNKWSKIASLLPGRTDNEIKNVWNTHLKKKLDPKNSESSGDESKLQSSVTSSASSSSESFFSNEGSNLANTPPVNEFMEQASEVTMTDKIEPDSEKQVSNEVNGINENLKESSNSLSSLESSILNSSQDIISYKPEQQLASPLIYPGPYDVDNTLQEVDKPNHDLVEIPWESDYDIWSLLDSIESFPPNEVPLGASQNHDLGVESVQVTEAMKWSHEFEGKAGVVGETNESNKDQFLPKNYAVEPQIDPPQTFHFNDMTSPAESELDFDFIQLWPSSP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3944 365 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lja3g3944 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lja3g3944 365 MobiDBLite consensus disorder prediction 127 160 - -
Lja3g3944 365 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lja3g3944 365 Gene3D - 70 142 - -
Lja3g3944 365 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lja3g3944 365 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lja3g3944 365 CDD SANT 71 114 IPR001005 -
Lja3g3944 365 Gene3D - 16 68 - -
Lja3g3944 365 CDD SANT 18 63 IPR001005 -
Lja3g3944 365 SMART sant 68 116 IPR001005 -
Lja3g3944 365 SMART sant 15 65 IPR001005 -
Lja3g3944 365 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lja3g3944 365 MobiDBLite consensus disorder prediction 117 160 - -
Lja3g3944 365 PANTHER - 1 317 - -
Lja3g3944 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 317 - -
Lja3g3944 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3944 Lja-Chr3 77757255 77759915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3944 1 317 MYB Transcription Factor Family AT1G79180 42.165 5.42e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g3944 Myb_DNA-binding 6.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3944 K09422 - gmx:100101836 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3944 3 77757255 77759915 Lja3g3944 3 77757255 77759915 ECH