Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3935 ATGGCTCCAAATCCTCACTTCTATTCAAACTACACAATATTCAACTCTGATCTTGCAGAGTTCCAAACCCAAGCGTTGGCTTCATCACTCAATGGCAATATTACTATGCAGGACAATAATACCATGTGGGGTTGTCAAGATAGTTTAATTCCTGTGCTTGATAATGGGGAAGTTGATCATCAAATTGTGCCATCCTCACTTGATTGTGATGCCATGTCCTCTGTTTGGATGCCAAACTTTTCAGAGCAACTAGGGGGCATTTCAGACATGGCCATGCCAGCAATTTCAGGCTTCTATGGTGGCAATATTACAGGTACAGGGTATCAGAATTTCAACAGCAGATTCCAACCCAAAATTGCTGATTTTGGGGAAGAATGTTGTGGTTTTGTGGAGGAAGTTAAGCCGAATGCTTATCTTAATGCTGCCAGAGAAAGCTGGGGAAATCAATGTACTCAAATACCAGCAGTTGAAGAGCCTAACATAAAGGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTGCGTTATTTGAAGAAAAGAAACCAAAGAAACTTTAACAAAACCATAAAGTATGCATGCCGGAAAACCTTAGCTGATAGGCGAGTAAGAGTTAGAGGAAGGTTTGCGAGAAACAACGAGCTATGTGATGAAGAGACCGCTTCAAAAAAGCACGAGAATCACCTTCACAAAGAAGACTTTTATGGTGGTGATTCATTTCAGTATCAGCTAAAGAATGAAGATGAGGACTGGCTGCAAGAGGCTTTGGCAAGTTTAGTCTATTTATCCCATTCTTCACCGGAAGATATGTGA 816 0.4081 MAPNPHFYSNYTIFNSDLAEFQTQALASSLNGNITMQDNNTMWGCQDSLIPVLDNGEVDHQIVPSSLDCDAMSSVWMPNFSEQLGGISDMAMPAISGFYGGNITGTGYQNFNSRFQPKIADFGEECCGFVEEVKPNAYLNAARESWGNQCTQIPAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDEETASKKHENHLHKEDFYGGDSFQYQLKNEDEDWLQEALASLVYLSHSSPEDM* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3935 271 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 266 - -
Lja3g3935 271 Pfam CCT motif 171 213 IPR010402 GO:0005515
Lja3g3935 271 PANTHER ACTIVATOR OF SPOMIN::LUC2 1 266 - -
Lja3g3935 271 ProSiteProfiles CCT domain profile. 171 213 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3935 Lja-Chr3 77523630 77525779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3935 167 220 C2C2-CO-like Transcription Factor Family AT5G15850 48.148 3.72e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja3g3935 CCT 8.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3935 - - vra:106761508 356.681