Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3931 ATGGTTGCAAACGAGGGCATGAGCAAGGATAATGGTCATGTGGAGGATGAAGTTCCACTTCCAGGATTTCGCTTCCATCCCACAGATGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAACAAACCCATCAGTATCGAACTCATCAAACAGATTGATATCTACAAACACGATCCTTGGGATCTTCCAAAAGCTACTGTCAGTACTGGAGGTGAAAAGGAGGGGTACTTCTATTGTAAGAGAGGGAGGAAGTATAGAAATAGCGTCAGGCCCAACAGAGTGACCGGGTCTGGGTTCTGGAAAGCAACTGGTATAGACAAACCAGTGTACTCCCATGGAGGAGAAGGACATGAGTGTGTTGGGCTCAAGAAAACACTGGTGTACTACCGTGGCAGCGCCGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCTAACACTGCAGACACCATCAACACAAAACTTCCCAACGCCAAGAATTATGTTGATCATACTGCCCAAGAAGCTGAAATTTGGACATTGTGTCGAATCTTCAAAAGAAATGTATCACAAAGGAAGCACACGCCAGAGTTGAGACTATTAGGTGCTAAGCGTCAGTGCGTTCATGACAAGAGCAGCAGATCAATGATGAGCAGTGCTGAGTTTAACACTAATCAAGAGACATATATCAACTTTGGTGCAAGCTTAGGCTATTATCAAGATGGGCAAAAACCCACCATCAGTAACTACTCAAGCAGTGATCAAAGGAATAACTTTCATGGAGGCCAGTTAAGATCTCCAACAGTGGTACAGCAAGCTCAAGTAAATGCAGCATCTTCGAACTTCTGGATGAACTTGGCCATGAGTACTGATCATTTCTTCACATCTGATAATTGGGATGAGCTTGGCTCAGTTGTGAAATTTGCTGCGTAG 930 0.4452 MVANEGMSKDNGHVEDEVPLPGFRFHPTDEELVSFYLRRKLDNKPISIELIKQIDIYKHDPWDLPKATVSTGGEKEGYFYCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSHGGEGHECVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPNTADTINTKLPNAKNYVDHTAQEAEIWTLCRIFKRNVSQRKHTPELRLLGAKRQCVHDKSSRSMMSSAEFNTNQETYINFGASLGYYQDGQKPTISNYSSSDQRNNFHGGQLRSPTVVQQAQVNAASSNFWMNLAMSTDHFFTSDNWDELGSVVKFAA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3931 309 Gene3D NAC domain 28 190 IPR036093 GO:0003677|GO:0006355
Lja3g3931 309 SUPERFAMILY NAC domain 18 186 IPR036093 GO:0003677|GO:0006355
Lja3g3931 309 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
Lja3g3931 309 ProSiteProfiles NAC domain profile. 19 186 IPR003441 GO:0003677|GO:0006355
Lja3g3931 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 308 - -
Lja3g3931 309 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 9 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3931 Lja-Chr3 77346095 77348286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3931 16 196 NAC Transcription Factor Family AT5G39820 57.068 1.18e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g3931 NAM 5.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3931 - - gmx:100790471 438.343