Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3902 ATGTCAACCTCTGGAAGGAAAGGTCGTGGCCGTCAAAAGATTGAAATGAAGAAAATGGAGAATGATAGCAACTTGCAGGTCACTTTCTCAAAGCGCCGCGGTGGGCTATTCAAGAAAGCCAGCGAGCTTTGCACCCTCTGCGGCGTAGAGATAGCTCTCATCGTCTTCTCCCCTGGCCAGAAAGTCTTCTCATTCGGCAATCCCAGTGTGGAGGCCATCATTGAGCGCTACCTCTCGCGTGGCCCGACTCAACCAACCGTCACCATGCACTACATCGAGGCTCAGCGAAACGCCAACGTGCGTGAGCTGAACAAATATCTGTCTCAGATCAACAACCAGCTTGACGCTGATATGAAGCGCAAGGAGGAGCTGAATTGTCGGCTCAAAGCGATGCAATCTCAGTTCTGGTGGGCTTGCCTGATTGAAAGCATGGACAAGTCTATGCTTGAGAAGTACAGGGTTGCTCTGGTTGAGCTCAAGAAGAAGGATGCAAACGTTGGTAGTGCTGTCGCTACCAACCCACCAATCAATCAATTTTTTTCTGGTGGACCCTCAAATTCAATGATCCCTCTCCACCACCCACCACCACCACCTCCTCAAGTGTTTCCACCACTGTATTTTCAGGCACCCATGATGCAGGCTAATCACTTTTTAGGTGGCTTTAATAACAATGGAGGATATGGAGGACCACCCCCTGGGTTCTACTAA 708 0.5 MSTSGRKGRGRQKIEMKKMENDSNLQVTFSKRRGGLFKKASELCTLCGVEIALIVFSPGQKVFSFGNPSVEAIIERYLSRGPTQPTVTMHYIEAQRNANVRELNKYLSQINNQLDADMKRKEELNCRLKAMQSQFWWACLIESMDKSMLEKYRVALVELKKKDANVGSAVATNPPINQFFSGGPSNSMIPLHHPPPPPPQVFPPLYFQAPMMQANHFLGGFNNNGGYGGPPPGFY* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3902 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lja3g3902 235 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Lja3g3902 235 Coils Coil 107 134 - -
Lja3g3902 235 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Lja3g3902 235 PANTHER MADS BOX PROTEIN 9 163 - -
Lja3g3902 235 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lja3g3902 235 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lja3g3902 235 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lja3g3902 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 9 163 - -
Lja3g3902 235 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lja3g3902 235 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lja3g3902 235 Gene3D - 89 174 - -
Lja3g3902 235 SUPERFAMILY SRF-like 10 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3902 Lja-Chr3 76810519 76811259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3902 6 187 Type I MADS-box Gene Family AT5G60440 46.486 3.33e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja3g3902 SRF-TF 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3902 - - gmx:100780445 218.009