Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3900 ATGGCACCACCATTTGGGAGAAAGCATGGAAAAAAGTCATCATCATCCATGGTCTCTCAGAACACTCTTACTTTAATTGCATCTTCTGAGAAGAAAAAGAATCATGTCTCTCTCCAACACAATAATGTGAGAAAAACATTGGGTGCATTTAGACAACTGTCTTCCAGACTTTTCAATCGAAGTATAGCAAAGAACCCTGGAGAACAGAGTGCACAAATAAAAGCTTTGTGGGGGGCAAGACAAACAATGAAAGATGAAGAGAAGTGTGAAAACACTCCAAAGCAGGTGGGACCTATTGAAGGAATTCAAGTTGGTGACAAATTCAACTACAGGGCTGAAATTCTTGTTATCGGCCTTCACAGGCAACCTAATAGGGGAATTGATTATGTCCAAGACATTAACAGGAATAACAGCTTTTTGGCAACGAGCATTGTCGTCACCAATCGCCGTGCAAACATGTTCCATAATGGCTCATTGGTCTACATAGGTGAGGGAGGGAACCCTGGTGTTAGGACAAATGGCTCTTCCCATGATCAGAAGTTGGAGAGAGGGAATCTTGCTTTGAGAAATAGCATGGATGCTAGAAGCCCTGTGAGGGTGATATTGAAAGTTTCCAGAAGTTCTGATAATGAGAGTGCCACTCAATTCTTATTTGTCTATGATGGGCTGTATTTTGTGAATGGTTTTACCAGAACAAGAGGTGATAATGGGAAACTTGTGTTCAAGTTTACATTGAATAGAATGTCTGGTCAACCCCCCACCTGTGTTGCCCATGCAGATTTGGGTTTTAAAGGGTCATATGCTTCAAGCTCTAGGAATAACAAGAGATCTAAAGGAAGTTCAGCAGCACAAAAGGAGAAGACTCGAAGGAATGATGTTTCAGAGGGTAAAGAAAACATTGCTATTCCATTGATGGCAACAAGTGACTGTCTTGAGTTGCCTCCACCCTTTGATTACATAGTCAATGTAGTCTATCCAGGAAGTTTGAACTTGACGCAGCAGCCAAATCCAAAAGATTCGCGTGTTCAATTCAAGCTGGCTATTTTCAAGACAGAAAAGAAAGGTTGGGGTGTTAGAACCCGATCTTTCATACCAATGGGAAGCTTTGTATGCCAGTTTGTTGGTGAAGCTCATTTGAATGGAAAAGATGGATTAAGATTGGGTACACATGACTACATACTGGACAAAGGTACTGACAAAGGTTACATTGATGCGACGAGGAGTGGAAATGTCGCAAGATTTATAAATCACAGTTGCACCCCAAATCTATGTCTCAATGATGAGGGTGATAAGAGCTTTCCACATATGATGATGTATGCTGTGAGGAACATTCCTGCCGGGAGAGAACTCACCTACAATTATAATTTCTACAACAGTAGACTTAATAAAGCTGACATTATTAAGTGCTATTGTTCGTCACAGGAATGCAAGGGACAAATATATGTTTGA 1449 0.4092 MAPPFGRKHGKKSSSSMVSQNTLTLIASSEKKKNHVSLQHNNVRKTLGAFRQLSSRLFNRSIAKNPGEQSAQIKALWGARQTMKDEEKCENTPKQVGPIEGIQVGDKFNYRAEILVIGLHRQPNRGIDYVQDINRNNSFLATSIVVTNRRANMFHNGSLVYIGEGGNPGVRTNGSSHDQKLERGNLALRNSMDARSPVRVILKVSRSSDNESATQFLFVYDGLYFVNGFTRTRGDNGKLVFKFTLNRMSGQPPTCVAHADLGFKGSYASSSRNNKRSKGSSAAQKEKTRRNDVSEGKENIAIPLMATSDCLELPPPFDYIVNVVYPGSLNLTQQPNPKDSRVQFKLAIFKTEKKGWGVRTRSFIPMGSFVCQFVGEAHLNGKDGLRLGTHDYILDKGTDKGYIDATRSGNVARFINHSCTPNLCLNDEGDKSFPHMMMYAVRNIPAGRELTYNYNFYNSRLNKADIIKCYCSSQECKGQIYV* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3900 482 SMART set_7 344 461 IPR001214 GO:0005515
Lja3g3900 482 SUPERFAMILY SET domain 284 471 IPR046341 -
Lja3g3900 482 SMART G9a_1 92 251 IPR003105 -
Lja3g3900 482 Gene3D SET domain 287 481 IPR046341 -
Lja3g3900 482 ProSiteProfiles YDG domain profile. 97 247 IPR003105 -
Lja3g3900 482 Pfam SAD/SRA domain 96 251 IPR003105 -
Lja3g3900 482 MobiDBLite consensus disorder prediction 267 295 - -
Lja3g3900 482 MobiDBLite consensus disorder prediction 279 295 - -
Lja3g3900 482 Pfam SET domain 355 455 IPR001214 GO:0005515
Lja3g3900 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 339 478 - -
Lja3g3900 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 15 331 - -
Lja3g3900 482 Gene3D - 78 286 IPR036987 -
Lja3g3900 482 ProSiteProfiles SET domain profile. 344 455 IPR001214 GO:0005515
Lja3g3900 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 339 478 - -
Lja3g3900 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 331 - -
Lja3g3900 482 SUPERFAMILY PUA domain-like 80 255 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3900 Lja-Chr3 76775172 76776708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3900 94 481 EF-hand Containing Proteins AT5G13960 27.126 7.78e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja3g3900 SAD_SRA 3.5e-36 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3900 - K11420 lja:Lj6g3v0156120.1 606.29