Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3896 ATGATTGTTATCCGTTCTGCTTCGATGCTCCATCTCCAAAATCTCCCACTTCGCTACCAATTCTTCTCTCACTTCACCCATGCTTACTCCTCTCTTCGCAATGCCACCTCGCCTTCTCTATTCAACTTCAAACCTCGCTTCATTCCTCTAACCCTTCCACGCCAAACGCAGTCACGGCTTGTTGCTTCTTCTTCTTCTTCTTCACCAGAAGCTTCTTCCAATGGCAGAGACACTTTCTTTGCTGAAGAACACGTTCTCTGGAGTTCACTCGGGCTCTCTGATACCCTTTCTCGAGGTCTCTCTGACATTGGCTTCAAAAGACCCTCTCTCGTTCAGGCTTCTTCGATACCGTCTGTGCTGTCAGGGAAAGATGTGGTCATTGCAGCGGAGACCGGCAGTGGTAAGACATACAGTTACCTGGCTCCTCTTATTGATAAGCTAGCCCAGGAACATTCTCCACATGCTGTACCTGACCAAGATGGGTTTTCGCCTCGGAAAATTCTGCTTGTCCTTTGTCCAAATGTGCAACTGTGTGAGCAGGTAGTTAGGATGGCTGACAGACTCCGAGGAGACACTGGTGAAACCATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAACTCGAGAACCTGATGTCATTGTGACGACACCTGCTACTCTTCTGAATTATGTTGATCGGGATAGATCTCGCCGCATGGAATTTATGCGTGGTGTCAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGCTTGATAAACTTGCTCCGCTATGATGAAAAACTCTCGTCATCAAAAGGCACTGTATCAGAGTTGCCAGTGGAACTTGAATCATCCTTGTCTTCACATGATGCTTCGGAAGGGGAAGAGGAACTTCCAACTGAAGCCATCTCAGAAGAGGATGTTGATGATGATAGTGAGGATATCATCAGTATTGATAATGAAGCTGAATCTGATAAACGGAGAGACTGGAGAAGGGGGGCAAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGAGAATGGAAAGAAAACAGCTGGAGGAATATTGAAACATATGTTTCCTGGTGCTAAGTGGGTTAGTGGAAACTATCTTCATTGTCATAATCCAAGATTGGAGCAAAGATGGATTGAAGTCACGGTTGATACACAGGTGGGTGAACTCATAAAGGCTGTGAAGCACGGTTTCACAGCCGAATATTTGGATAATGCTGGTGGCGTTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGATGCTGTTGCAAAGATATTGCTACGGTCAGGGATTGAGTGTTTACTTTATCATAAGAATTGCACATTAGAAGAGCGCGCACAGACCTTGGTTGATTTCCATGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTAGACATTCCAAATGTCTTGCATGTTATTCAGGCAGACTTTGCTACCTCTGCTGTAGACTTCTTGCACAGGGTTGGTCGTACAGCTAGAGCTGGCCAATTTGGACTTGTTACAAGCATGTACACTGAATCCAACAGGGAGCTTGTTAATGCAGTTCGTCGGGCAGCAGACCTTGGTCAACCTGTGGAGACTGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAAAAGAGGGCGCGTGCCAACCAAGCTAGAGGTCCAGAAATTATTGAAGAGAGTTTTGTAGCCTGA 1758 0.4568 MIVIRSASMLHLQNLPLRYQFFSHFTHAYSSLRNATSPSLFNFKPRFIPLTLPRQTQSRLVASSSSSSPEASSNGRDTFFAEEHVLWSSLGLSDTLSRGLSDIGFKRPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLAPLIDKLAQEHSPHAVPDQDGFSPRKILLVLCPNVQLCEQVVRMADRLRGDTGETIVSVAAICGRQGWPTREPDVIVTTPATLLNYVDRDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKLSSSKGTVSELPVELESSLSSHDASEGEEELPTEAISEEDVDDDSEDIISIDNEAESDKRRDWRRGARKNYERSKQYIFVAATLPENGKKTAGGILKHMFPGAKWVSGNYLHCHNPRLEQRWIEVTVDTQVGELIKAVKHGFTAEYLDNAGGVHRTMVFANTVEAVDAVAKILLRSGIECLLYHKNCTLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNRELVNAVRRAADLGQPVETAFSRKRSFRNKLKKRARANQARGPEIIEESFVA* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3896 585 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 55 559 - -
Lja3g3896 585 Gene3D - 55 373 IPR027417 -
Lja3g3896 585 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 559 - -
Lja3g3896 585 SMART helicmild6 440 520 IPR001650 -
Lja3g3896 585 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 568 IPR001650 -
Lja3g3896 585 CDD SF2_C_DEAD 391 529 - -
Lja3g3896 585 CDD DEADc 96 271 - -
Lja3g3896 585 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 113 IPR014014 GO:0003724
Lja3g3896 585 Pfam Helicase conserved C-terminal domain 423 520 IPR001650 -
Lja3g3896 585 MobiDBLite consensus disorder prediction 303 324 - -
Lja3g3896 585 SMART ultradead3 104 394 IPR014001 -
Lja3g3896 585 Gene3D - 398 585 IPR027417 -
Lja3g3896 585 MobiDBLite consensus disorder prediction 285 326 - -
Lja3g3896 585 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 375 IPR014001 -
Lja3g3896 585 Pfam DEAD/DEAH box helicase 111 358 IPR011545 GO:0003676|GO:0005524
Lja3g3896 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 532 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3896 Lja-Chr3 76736426 76743735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3896 426 537 Eukaryotic Initiation Factors Gene Family AT3G13920 26.549 6.81e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3896 - - gmx:100780518 829.32