Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3894 ATGACCTGTTTTCCTTTCATATTCAATAAGGGGTCTTCTTCAGCTAGAAAAAATCCAGATACTGCTGATGAAGATATTTCGGACATTCATAATGTTAAGATATATACCTACAAAGAACTAAGAAATGCAACTGAGGATTTTAGTCTGGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAAATCGCTGCTATAAAAGTTCTTTCAGCTCAATCAAGACAAGGGGTGAAGGAGTTCTTGACAGAGATTAATGTGATCTCTGAAATAGAGCATGAAAATTTGGTTAAATTATATGGTTGCTGTGTGGAAAGAAATAACAGGATATTAGTCTACAATTACCTTGAGAATAACAGCCTTTCACAAACTCTTCTAGATGGAGGTCATAGTAGTATCTACTTCGATTGGCAAACAAGGACTAGAATATGCATTGGAATTGCAAGGGGGCTTGCTTATCTCCATGAAGAAGTGAGTCCTCATATTGTTCACAGGGACATAAAGGCAAGCAATATTCTACTTGACAAAGACCTTACACCCAAGATTTCTGATTTTGGCCTTGCAAAGCTTATTCCAGCTAACGCCACTCACGTCAGCACTCGTGTAGCAGGAACATTAGGTTATTTGGCACCAGAGTATGCAATAGGGGGGAAGCTAACACGGAAAGCAGACATTTACAGTTTTGGCGTCCTCCTTGCAGAGATAATCAGTGGGAGATGCAACACAAATTCACGATTACCATCAGAAGAACAATTTCTTCTAGAAAGGGCATGGGAACTTTATGAAAGAAAAGAATTAGTAGGGCTGGTAGACATATCATTAAATGGGGAATTCGATGCGGAGCAGGCTTGTCAACTTCTGAAGATTAGCCTCCTTTGCACTCAGGAATCACCAAAGCAAAGGCCATCCATGTCTTCTGTGGTCAACATGCTCACTGGAAAAAGGCATGTTGATGATAGTGGGATAACAAAACCTGCCTTAATTACTGATTTTCTTGACCTCAAAGTTAGAAAGAAAGAGGAAAGTATTACTGACTTGAAGACTACTTCTACAGATGATACTTCCTCTGGCTCAGCCAACCAAGACACTACCATGTCATCATCAGATGCATACACAACTTTCAGCACTGTACGGTATGATCAGAGCATTTAA 1173 0.399 MTCFPFIFNKGSSSARKNPDTADEDISDIHNVKIYTYKELRNATEDFSLANKIGEGGFGSVYKGRLKDGKIAAIKVLSAQSRQGVKEFLTEINVISEIEHENLVKLYGCCVERNNRILVYNYLENNSLSQTLLDGGHSSIYFDWQTRTRICIGIARGLAYLHEEVSPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANATHVSTRVAGTLGYLAPEYAIGGKLTRKADIYSFGVLLAEIISGRCNTNSRLPSEEQFLLERAWELYERKELVGLVDISLNGEFDAEQACQLLKISLLCTQESPKQRPSMSSVVNMLTGKRHVDDSGITKPALITDFLDLKVRKKEESITDLKTTSTDDTSSGSANQDTTMSSSDAYTTFSTVRYDQSI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3894 390 CDD STKc_IRAK 53 320 - -
Lja3g3894 390 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Lja3g3894 390 MobiDBLite consensus disorder prediction 350 373 - -
Lja3g3894 390 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3894 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lja3g3894 390 PANTHER - 2 377 - -
Lja3g3894 390 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3894 390 MobiDBLite consensus disorder prediction 355 373 - -
Lja3g3894 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 377 - -
Lja3g3894 390 Pfam Protein kinase domain 49 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3894 390 SUPERFAMILY Protein kinase-like (PK-like) 27 320 IPR011009 -
Lja3g3894 390 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Lja3g3894 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3894 Lja-Chr3 76716777 76724593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3894 16 337 Receptor kinase-like Gene Family AT1G56120 54.938 1.69e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g3894 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3894 - - gmx:100782320 611.298