Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3870 ATGTCTTCCTCAACTGCTTCATCGTCGAACACCCAAAATCCCGAAAGGATGGAAGACCAAGTTTTCCTAAGCTTCACACCGGAAGACGTTGAGGTGGAGGAATTCATTCTCACTCTCCATATGGACCTAACAATGTCCGGAATCCGAACCTGCTACGACAAGATCAACGCGCTTCGGGGAGTGAACCAAAACTCGCTGCGGCGTTCAAACTGGCCAGCAATCGATGGGTCAAGGCTTTCCGTCGTCGTTTTCTCCGAACACTACGGCGGTTCTAGCGAGTGTCTGGAGGAGCTGGAGAAGATCATGGAGTGTCACAGAGCCACGGGTCACGTGGTTTTACTCGTGCTCCATGGCGTGGATTTGTGGGATGTGCGCAAGCAAAAGGGTAGATTCGGACAAGAGTTTGAACGAATGGTCAAGGATGTGACGGTGGAGGAACACACCGTGTTGAATTGGAGGAGGGCCCTGTCTGAAGCTGCTTTCTTATGCGCTGGCTTTACGTCCCGTTACCACTTTTATCGTGATATGTCAATTACGGACTTCATTCGTATGGTGCTAGATGGTAAATATATGTCCCGCCCTCTCCATCCTGTTGGGTTAGATGTTCATGCTAAAGATCTTTATGGCAAAATTGGTTACTATCTTAAAAAAGTTAACTTTGTAGGAATATGGGGAAAGGGAGGGATTGGTAAAACATCCATTGCCAAAGTTATTTACAACCGCATGTTCGAAAGTTTTGAGGGTTCAAGTTTTGTTGCTAATATTAAGGATGTATGGAAGCAGGATAAGGGTGAAGATTATCTACGAACACAACTTCTTTCTGACATCAACAGTACAACAGACATGGCAGTACATAGCACTGAAGTGGAGAAAATATTAGCTCATAAAAGGGTACTTGTAGTACTTGATGATGTGAGTAACACAGACCAGCTGATATCATTATGTGGAAGTCGTAAAAGGTTTGGTGTTGGGAGTATAATAATGATTACAACCAGAGAAAAGCAAGTTCTTGATCTCTTTGAATTGGACGTTGTATATGAAATGAAGGAAATGGACCCAAGTAAATCACTTGAGCTTTTTAGTTGGCATGCATTTAAGCATTATATTCCTACCGATGATTGGATTCAACTCTCAAGAAAAGCAATTTCTTTCTGTGGAGGACTGCCACTGGCTCTTGAAGTATTGGGTTCGTTGTTACTTGACAGAACAGCATCACAGTGGAAAAGTATACTGAAGCTACTCAAAAGAAATCAAAGTAATGAAGTGCTAAATATATTAAAACTGAGCTATGACTTTCTTGATGATAATGAGAAAAAAGTATTCATTGAAATAGCTTGTTTCTATATGGGAAAGGACAGACACAATGTCACACAATTATTAAGTGGCTGTGGACTTGCTGCAGAAACTGGGATAAGTAAACTCATTGAACGTAGCCTGTTAAAGGTTGACAAAAATAACAAGCTTGAAATGCATGATTTGGTGCAAGAGATGGGAAGAGAACTGAATCGTTTGAAGCCAAAATCCAAATGGATCCATACTGTGTTCCTGAGCTTCCGAGGTTTAGACACTCGCAGGTCTTTCACTTCTCATCTCTATGCCGCTTTACAACATGCTGGTATTGAGGTTTACATGGATGACAAACTGAAAAGGGGAGAAAATATCTCATCCTCATTGTTACAAGCAATTGAAGGCTCTAGAGTTTCTATCATCATTTTTTCAGTAAACTATGCAAACTCAATATGGTGCCTACAAGAGCTGGAGAAAATCATGGAATGTCATAGAGCTATTGGTCAAGAAGTTGTCCCTGTATTCTACGGTGTGGAACCATCGGAAGTACGCAAACAAATTGGATCTTTTGGACAAGCTCTGGATGGACTTGTACAGAGAATCTCAGCTACGAAAGATATGATTGTCAGATGGAAAAGAGCACTCACTGAAGCTGCGAACTTGTCTGGGTGGAATCTAAACAGTTACAGAACAGAAATTGAGATGATTAGTGATATTGTTAAAACTGTTACCACAAGACTAGATGACAACACATACTTATTTGTTGCTGATCATCCAGTGGGAGTGGAATCTCGTGTGCAGGACATGGTTCAATTATTAAGTGGTAAATCAAATGAGGTTCGCATAGTAGGAATCTTAGGAATGGGAGGAAGCGGTAAAACAACCATCGCCAAAGCCATTTACAATGAAATTAATCAGAACTTTGATGGTAAAACTTTCCTTGCAAATATAAGGGAAGTTTGGGACCAAGATGATGGCAGAGTTTATTTGCAAGAACAACTTCTTTCAGGCATCTTGAGAACCAGAAGGATGAAATTACATACCATTGAATTGGGAAAAACAATAATAAAAGAAAAACTTTGCCACAAGAGGGCACTTGTTGTACTTGATGATATAAATAATTTGGACCAAGTAAATGCTCTGTGTGGAAGTCGTGAATGGTTTGGTCAAGGAAGTAGGTTAATTATCACAACTAGAGATGAGCATTTACTGAAAGTTCTGCAAGTGGATCATATTTACAGAACCCAAGAAATGGATGAAAGCGAGTCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGCTGCTCCAAACGCAGATTTCGTTGGACTCTCAAGAATGGTTGTTGCATACTCTGGAAGACTACCACTAGCCCTTGAAGTTCTTGGCTCTTGTTTGTTTGAAAGGAAAATTGCTGAGTGGGAAAGTACATTAATGAAACTTGAAGTAATTCCCAATGATCAGATACAGAAGAAATTAAAATTAAGCTATGATGGTTTAAGTGATGATATGGAGAAAGACATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGACAGAAATTATGTTGCACAGATTTTAGATGGATGTGGACTTCATGCAGAAATTGGGATTACTGTCCTCATAGAGCGAAGCCTTGTAAAAGTTGACAAGAATAATAAGCTTCAAATGCATGATTTGCTCAAAGTAATGGGAAGAGAGATAATACGTGAGATGTCACCTACGAAGCCTGAGGAGCGCAGCCGGTTATGGTTTCATGATGATGTAGTTGATATGATGACAAACAACACTGCAACAATAGCAGTCAAGGGACTGGCTTGTAGCTTACCAAAAAATAATGATGTTGTTTTCGAGACTAAAGCATTTAAGAAGATGAAGAGACTCAGATTGCTTCAACTTGGTCATGTAAACCTTACTGGAGATTTTGAATATTTATCAAAAGACTTGCGCTGGCTCTGTTGGCATGGATTTCCTTTAGGATACTTGCCTGGCAGCTTTTGTCCGAAAAGTTCAGTTGCTATTGACTTAAAGCACAGCAATCTGCAATTAGTCTGGAAGGAGCCTCAGTTGCTCGATAGGCTGAAATTTCTCAATCTGAGTCATTCTCATCACTTGACGCAGACCCCTGATTTTTCAAGATTACCAAATCTTGAAAAGCTAATCCTCAAAGATTGTCCACAATTGTCAACTGTGCACTCAACAATTGGAGATCTCAAATATCTTAAGCTGGTAAATTTGAAGGACTGTAAATCCCTCAGTGACCTCCCAAGAAGTATATATAAGTTGAAATCTCTGAAATCTCTTGTCCTTTCCGGCTGTTCAAAACTTTACAAGTTGGAAGAGGACATCATGCAGATGGAGTCCTTGACAAGTCTATTGGCAGATGGCACTGCTATCACACAAGTGCCCTTTTCTTTAATGAGATTGAAAAGTATCAAACACGTGTCCATTTGTGGCTATGAAGGATTATCAAGTCATATATTTCCTTCTCTAATTTTTTCTGGAATGTCTCCACGAAATCTTATGTATAAAGTTTTTGGGAGCATTTCATCATCGCTTCAAAGTCTTTCACTTGGTTCAGCTGCCATGAGTCGTGCAGAATTGGAATTAAGAACACAACAGATAACACATATAGAGACTCATCCATCAATTGATTGTCACAATTCCATTCACTCTGCAAGGTCTGAAAATTTCACCAGTTCTCTCATTATTCAAGCTGGAGAGTGCTGCAAAGCCACTGATACTCTTACAGGCAGTATTTCGCAGGGATGGACTAATGATGGATCTGGTGACTGTGATTGTTCTTTTCCTAGTGACACTAAATGCCTAACCTTCAAAGGTGAAAGTTCCTCAGTATGGTTTAAAGTGCCTATTACTGATTGCACATTGAAAGGGGTGACTCTACACATTATTTATTCATCTTCCCTTGACAACCTGGCTTCTGAATGTGATCTTATTAGTGTCTCTATGATAAATTACACAAACGATACCATTCATCTCTACAAACGAGACAAAACAACTTCCGTCGATGATGAAGAGTGGCAAGGATTGATGTCAAGTCTTGGACCTGGTGATGAAGTGGAGGTTGTTATAGTTTTTGGACATCGATTTGTCGTGAAGAAGACAATAGTCCATCTAATATACGGTGAATCAGCCAACTAG 4452 0.3987 MSSSTASSSNTQNPERMEDQVFLSFTPEDVEVEEFILTLHMDLTMSGIRTCYDKINALRGVNQNSLRRSNWPAIDGSRLSVVVFSEHYGGSSECLEELEKIMECHRATGHVVLLVLHGVDLWDVRKQKGRFGQEFERMVKDVTVEEHTVLNWRRALSEAAFLCAGFTSRYHFYRDMSITDFIRMVLDGKYMSRPLHPVGLDVHAKDLYGKIGYYLKKVNFVGIWGKGGIGKTSIAKVIYNRMFESFEGSSFVANIKDVWKQDKGEDYLRTQLLSDINSTTDMAVHSTEVEKILAHKRVLVVLDDVSNTDQLISLCGSRKRFGVGSIIMITTREKQVLDLFELDVVYEMKEMDPSKSLELFSWHAFKHYIPTDDWIQLSRKAISFCGGLPLALEVLGSLLLDRTASQWKSILKLLKRNQSNEVLNILKLSYDFLDDNEKKVFIEIACFYMGKDRHNVTQLLSGCGLAAETGISKLIERSLLKVDKNNKLEMHDLVQEMGRELNRLKPKSKWIHTVFLSFRGLDTRRSFTSHLYAALQHAGIEVYMDDKLKRGENISSSLLQAIEGSRVSIIIFSVNYANSIWCLQELEKIMECHRAIGQEVVPVFYGVEPSEVRKQIGSFGQALDGLVQRISATKDMIVRWKRALTEAANLSGWNLNSYRTEIEMISDIVKTVTTRLDDNTYLFVADHPVGVESRVQDMVQLLSGKSNEVRIVGILGMGGSGKTTIAKAIYNEINQNFDGKTFLANIREVWDQDDGRVYLQEQLLSGILRTRRMKLHTIELGKTIIKEKLCHKRALVVLDDINNLDQVNALCGSREWFGQGSRLIITTRDEHLLKVLQVDHIYRTQEMDESESLELFSWHAFKQAAPNADFVGLSRMVVAYSGRLPLALEVLGSCLFERKIAEWESTLMKLEVIPNDQIQKKLKLSYDGLSDDMEKDIFLDICCFFIGKDRNYVAQILDGCGLHAEIGITVLIERSLVKVDKNNKLQMHDLLKVMGREIIREMSPTKPEERSRLWFHDDVVDMMTNNTATIAVKGLACSLPKNNDVVFETKAFKKMKRLRLLQLGHVNLTGDFEYLSKDLRWLCWHGFPLGYLPGSFCPKSSVAIDLKHSNLQLVWKEPQLLDRLKFLNLSHSHHLTQTPDFSRLPNLEKLILKDCPQLSTVHSTIGDLKYLKLVNLKDCKSLSDLPRSIYKLKSLKSLVLSGCSKLYKLEEDIMQMESLTSLLADGTAITQVPFSLMRLKSIKHVSICGYEGLSSHIFPSLIFSGMSPRNLMYKVFGSISSSLQSLSLGSAAMSRAELELRTQQITHIETHPSIDCHNSIHSARSENFTSSLIIQAGECCKATDTLTGSISQGWTNDGSGDCDCSFPSDTKCLTFKGESSSVWFKVPITDCTLKGVTLHIIYSSSLDNLASECDLISVSMINYTNDTIHLYKRDKTTSVDDEEWQGLMSSLGPGDEVEVVIVFGHRFVVKKTIVHLIYGESAN* 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3870 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 442 IPR027417 -
Lja3g3870 1483 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 504 IPR044974 GO:0006952
Lja3g3870 1483 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 522 1474 IPR044974 GO:0006952
Lja3g3870 1483 ProSiteProfiles TIR domain profile. 17 186 IPR000157 GO:0007165
Lja3g3870 1483 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 30 504 - -
Lja3g3870 1483 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 522 1474 - -
Lja3g3870 1483 SMART AAA_5 708 851 IPR003593 -
Lja3g3870 1483 SMART AAA_5 217 352 IPR003593 -
Lja3g3870 1483 Gene3D Ribonuclease Inhibitor 1035 1325 IPR032675 -
Lja3g3870 1483 Gene3D - 846 930 IPR042197 -
Lja3g3870 1483 Gene3D - 351 434 IPR042197 -
Lja3g3870 1483 Pfam TIR domain 21 158 IPR000157 GO:0007165
Lja3g3870 1483 Pfam TIR domain 512 676 IPR000157 GO:0007165
Lja3g3870 1483 SUPERFAMILY L domain-like 1039 1289 - -
Lja3g3870 1483 SUPERFAMILY Toll/Interleukin receptor TIR domain 508 653 IPR035897 -
Lja3g3870 1483 PRINTS Disease resistance protein signature 788 802 - -
Lja3g3870 1483 PRINTS Disease resistance protein signature 1190 1206 - -
Lja3g3870 1483 PRINTS Disease resistance protein signature 711 726 - -
Lja3g3870 1483 PRINTS Disease resistance protein signature 881 895 - -
Lja3g3870 1483 CDD ABC_ATPase 702 843 - -
Lja3g3870 1483 SMART till_3 511 650 IPR000157 GO:0007165
Lja3g3870 1483 SMART till_3 18 162 IPR000157 GO:0007165
Lja3g3870 1483 SUPERFAMILY "Winged helix" DNA-binding domain 917 1023 IPR036390 -
Lja3g3870 1483 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 160 IPR035897 -
Lja3g3870 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 941 IPR027417 -
Lja3g3870 1483 Pfam NB-ARC domain 219 431 IPR002182 GO:0043531
Lja3g3870 1483 Pfam NB-ARC domain 693 925 IPR002182 GO:0043531
Lja3g3870 1483 SUPERFAMILY "Winged helix" DNA-binding domain 421 504 IPR036390 -
Lja3g3870 1483 Gene3D - 205 344 IPR027417 -
Lja3g3870 1483 ProSiteProfiles TIR domain profile. 510 676 IPR000157 GO:0007165
Lja3g3870 1483 Gene3D - 14 190 IPR035897 -
Lja3g3870 1483 Gene3D - 506 680 IPR035897 -
Lja3g3870 1483 Gene3D - 681 841 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3870 Lja-Chr3 76262183 76286017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3870 21 503 WRKY Transcription Factor Family AT4G12020 27.143 3.67e-41 164