Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3850 ATGGACTCATCTGAGGGGTTAAAAAAGAAGCCAGACACTATTTTTGTGTATGAAAGAAGAAGAAAAGGCACTAACTCTAAAAAAAGATTGTCGCTGCTGTACAGTAAAATAGCAAATCTCAATCAAGTCAGTACCTTACCTTCAGAATCTTCTGTGGCTAAAAATGATGGATCACGTGAAATTGGAGATGATGGCAGTTACTTTGAATGCGAGCTGTGCAATGATGGAGGAGAATTGCTCTGCTGTGATGCTTGCCCTCGAACTTATCACTTGGAATGCCTTGGTCTTAAATCTGTTCCTCCTGAAAAAGAATGGCTATGCCCAAACTGCTCTGAGCTTTCAATGCCCAAGAAACATTTGAAGAGCTCCAAAAAAGACATCTCATCTAAGAAAGTCAAAGCTGGTTCTTGCTCCTCAGGATCAAAGAACAAGAAGCAATCAAATTAA 447 0.3982 MDSSEGLKKKPDTIFVYERRRKGTNSKKRLSLLYSKIANLNQVSTLPSESSVAKNDGSREIGDDGSYFECELCNDGGELLCCDACPRTYHLECLGLKSVPPEKEWLCPNCSELSMPKKHLKSSKKDISSKKVKAGSCSSGSKNKKQSN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3850 148 MobiDBLite consensus disorder prediction 117 131 - -
Lja3g3850 148 ProSitePatterns Zinc finger PHD-type signature. 70 110 IPR019786 -
Lja3g3850 148 ProSiteProfiles Zinc finger PHD-type profile. 67 113 IPR019787 -
Lja3g3850 148 MobiDBLite consensus disorder prediction 132 148 - -
Lja3g3850 148 MobiDBLite consensus disorder prediction 116 148 - -
Lja3g3850 148 PANTHER PROTEIN CHROMATIN REMODELING 4 19 145 - -
Lja3g3850 148 SUPERFAMILY FYVE/PHD zinc finger 52 114 IPR011011 -
Lja3g3850 148 SMART PHD_3 69 111 IPR001965 -
Lja3g3850 148 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 19 145 - -
Lja3g3850 148 Pfam PHD-finger 70 112 IPR019787 -
Lja3g3850 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3850 Lja-Chr3 75824735 75828702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3850 70 111 PHD Transcription Factor Family AT1G05380 57.143 8.52e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g3850 PHD 1.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3850 - - lja:Lj0g3v0315929.1 271.937