Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3846 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCAGATACCATTGACAATGTGAAGACGAAAATTCAGGACAAAGAGGGTATCCCTCCAGATCAACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAACATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGGCATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATAACTTTGGAGGTTGAAAGCTCAGATACTATTGATAATGTGAAATCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAACTTGAGGATGGAAGGACCTTGGCTGATTACAACATCCAGAAGGAGTCCACCCTACATTTGGTGCTGCGACTGAGAGGTGGCATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCAGATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCGCCAGATCAGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATAACATTCAGAAGGAGTCTACTTTGCATTTGGTCTTGCGGCTTCGTGGTGGCATGCAAATTTTTGTGAAAACTTTAACTGGGAAGACGATCACCTTGGAGGTTGAGAGTTCTGATACCATTGATAATGTGAAAGCAAAAATCCAGGACAAAGAGGGTATCCCACCGGACCAGCAGAGGCTTATATTTGCTGGGAAGCAGTTGGAAGATGGTAGAACCTTTGCTGATTATAATATCCAGAAGGAATCCACCCTGCATTTGGTTTTGCGGCTCCGTGGTGGGATGCAGATTTTTGTCAAGACTTTGACAGGGAAGACCATAACTTTGGAGGTTGAGAGCTCTGATACAATTGATAATGTAAAAGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGGCGTACACTGGCGGATTATAATATTCAGAAGGAATCCACTCTTCATCTTGTCCTTCGTCTGCGCGGTTTGAAGTTTATTTGTTACTCTGTTTGTTTCAAGTTGTGGATTGTAGCCCTGTTTAGTGGCTGTTATAATGTTTCAAGTTTGGTGTATGAACCTGCTCCTTAA 1239 0.4383 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTFADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGLKFICYSVCFKLWIVALFSGCYNVSSLVYEPAP* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3846 412 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Lja3g3846 412 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lja3g3846 412 PANTHER UBIQUITIN 76 284 - -
Lja3g3846 412 PANTHER UBIQUITIN 281 379 - -
Lja3g3846 412 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Lja3g3846 412 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Lja3g3846 412 PANTHER UBIQUITIN 1 207 - -
Lja3g3846 412 SMART ubq_7 305 376 IPR000626 GO:0005515
Lja3g3846 412 SMART ubq_7 1 72 IPR000626 GO:0005515
Lja3g3846 412 SMART ubq_7 229 300 IPR000626 GO:0005515
Lja3g3846 412 SMART ubq_7 77 148 IPR000626 GO:0005515
Lja3g3846 412 SMART ubq_7 153 224 IPR000626 GO:0005515
Lja3g3846 412 CDD Ubl_ubiquitin 77 152 - -
Lja3g3846 412 Gene3D - 1 76 - -
Lja3g3846 412 Gene3D - 77 152 - -
Lja3g3846 412 Gene3D - 305 383 - -
Lja3g3846 412 Gene3D - 229 304 - -
Lja3g3846 412 Gene3D - 153 228 - -
Lja3g3846 412 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Lja3g3846 412 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lja3g3846 412 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Lja3g3846 412 CDD Ubl_ubiquitin 229 304 - -
Lja3g3846 412 PRINTS Ubiquitin signature 184 204 IPR019956 -
Lja3g3846 412 PRINTS Ubiquitin signature 205 226 IPR019956 -
Lja3g3846 412 PRINTS Ubiquitin signature 163 183 IPR019956 -
Lja3g3846 412 PANTHER UBIQUITIN 13 152 356 - -
Lja3g3846 412 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Lja3g3846 412 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Lja3g3846 412 PANTHER UBIQUITIN 13 1 207 - -
Lja3g3846 412 PANTHER UBIQUITIN 13 281 379 - -
Lja3g3846 412 PANTHER UBIQUITIN 13 76 284 - -
Lja3g3846 412 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Lja3g3846 412 CDD Ubl_ubiquitin 305 379 - -
Lja3g3846 412 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lja3g3846 412 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Lja3g3846 412 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Lja3g3846 412 CDD Ubl_ubiquitin 1 76 - -
Lja3g3846 412 CDD Ubl_ubiquitin 153 228 - -
Lja3g3846 412 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Lja3g3846 412 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Lja3g3846 412 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Lja3g3846 412 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Lja3g3846 412 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lja3g3846 412 SUPERFAMILY Ubiquitin-like 304 379 IPR029071 -
Lja3g3846 412 PANTHER UBIQUITIN 152 356 - -
Lja3g3846 412 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3846 Lja-Chr3 75743500 75745073 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3846 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 2.19e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3846 K08770 - twl:119998207 729.939