Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3839 ATGGAGAATTCGGTGTTGATGGAAGAAAAGCCAGTGGCTCCCACGGTTGCAGCCGTTGGATTCGCCATGATGTTTAGAGCATTTGTTGGTCTTGGTGCCATAGTGATCAAGGGGCACAAGAGGCTACAAGATTGGCAAAAGAGAAACAGCTTCTCTTCGTGGTTGCTTCCTCTACATGCTGGTGACACAAGCTTCATGAGCAGCAAGACCTCAATGGGGAAAAGCAACATCTACTCCTCATCAATGGGGTTAGGAAGGCTTTTCACCTTTGCAGAAATCACAGAAGCAACAAAGAACTTTGACTCCAAGAACATCATTGGTGTTGGTGGACGCAAGCACTTGGTGTCATTGATTAGTTACTGTGATGAGATGATTTTGGTTTATGAGTACATGCCTAATGGTCACTTAAGAGACCGTCTTTATGGAAAGGACATGCCTGCCTTGTCCTGGAAGCAAAGATTAGATATCTGCATTGGTGCGGCGCGTGGTCTTCATTACCTTCACACTGGAACAGCACAAGGAATCATCCACCGCGACGTGAAGACCACAAACATTCTCCTAGATGAGAATTTCACAGCCAAAATTTCTGACTTTGGGTTTCAAAGGATGCACCAATGGGCAGGGTCATGTGAGCACTGCAGTGAAAGCTTCAAGAGGCTTTCACACAAGGTAAAGCTGAAGATGAGATCAAATCCTACCACACCTTCTGATGAACATCCACTTCCACCTGCTTCACCTTCTCCTGCTCCTGCTGTTGTTCCTGAAGTGAATAATAACAATGCGGCTCCAGCTCAAGTTCCTGCTTTCGATATGTACCGAGATTAA 825 0.4582 MENSVLMEEKPVAPTVAAVGFAMMFRAFVGLGAIVIKGHKRLQDWQKRNSFSSWLLPLHAGDTSFMSSKTSMGKSNIYSSSMGLGRLFTFAEITEATKNFDSKNIIGVGGRKHLVSLISYCDEMILVYEYMPNGHLRDRLYGKDMPALSWKQRLDICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKISDFGFQRMHQWAGSCEHCSESFKRLSHKVKLKMRSNPTTPSDEHPLPPASPSPAPAVVPEVNNNNAAPAQVPAFDMYRD* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3839 274 Gene3D Transferase(Phosphotransferase) domain 1 91 225 - -
Lja3g3839 274 MobiDBLite consensus disorder prediction 228 274 - -
Lja3g3839 274 Pfam Protein tyrosine and serine/threonine kinase 111 205 IPR001245 GO:0004672|GO:0006468
Lja3g3839 274 ProSiteProfiles Protein kinase domain profile. 10 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3839 274 SMART tyrkin_6 100 269 IPR020635 GO:0004713|GO:0006468
Lja3g3839 274 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 112 201 - -
Lja3g3839 274 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 14 110 - -
Lja3g3839 274 SUPERFAMILY Protein kinase-like (PK-like) 75 208 IPR011009 -
Lja3g3839 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lja3g3839 274 PANTHER OS07G0166700 PROTEIN 112 201 IPR045272 GO:0004714|GO:0006468
Lja3g3839 274 PANTHER OS07G0166700 PROTEIN 14 110 IPR045272 GO:0004714|GO:0006468
Lja3g3839 274 MobiDBLite consensus disorder prediction 236 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3839 Lja-Chr3 75615615 75616902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3839 16 202 Receptor kinase-like Gene Family AT2G21480 58.190 1.99e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lja3g3839 PK_Tyr_Ser-Thr 1.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3839 - - gmx:100793784 311.612