Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3831 ATGCTAATGAGTAGTTCCTGCCAAGTTCACATGTCATTTCGCATTCTACAATTTCCATGCTCAAAGCTACCCAACATGCTTCTCTTCCTTCACCTTCGTCCCAACACAAACTCTACCTTCTTCCCCTCATCAACCATTCTCTGCTCATCTCTCAGCGACGACTCGTTTTCAATCCCTAAACCAACCCAGTTGGGTTACACTCCTCCAGAGGACCCGTTTGGACTCGACGTGGAACTCAAACCAAGCAAAGCTAACTCTCAAACACAAGAACCAAGGTCCTGGTTTGGTCCCAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGCTGCCGAGGAAGGGGTTATACTCCTTGTACTGAGTGCGGGATAGAAAGATCAAGGTCAGATTGTCCAAAATGTATTGGGAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATTGTGTCATATGGGAAGAATCAATTGATGAGCAGCCATGGGAGAGAGCCCGTTCTGTCTCCCCGCTTAAAGTGATGGAAGATGAGGAAGTTGACAACTTAGACATAAAGCTAGATGTGAAAAAAAGGTCCAAGCGTGTTTACCAGTCGCCACCACCTGAAGTTGGATTAAAGATCAGTCGCTCATTAAAAAGTCTCAATGCTAAGACTGGTTTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCATGCTTCAAGCACAGCGAGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGACAACATGCTTCCAAAACTATGAAAGTTTTCTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCTTGGCCATGAAGGGAGTGAAGTTCTACTGCCAAACCTGTGGACGTGAAGGGCATAGGAGGCACTACTGTCCAGAACTCAAGGATAGTTTGATTGTTTCGCAATTCACGTGTAGTGTGTGCGGGGGAAAAGGCCACAACAGAAGAACATGCAGAAAGTTGAAGATAAGCCATAACAATGGGGGAGTTACAAATCACCATCGGTGTAAAATATGTAGCCAATATGGCCATAACCGCAGGACATGCCCTCAAGTTGTCTCTAATAAAAGGAGAGACATAACTTCTCGAAGAGCATACAAGTGCCGATTGTGCCAGAAAGAGGGACACAATATTAGGACCTGCCCTGGTAGTAGAGCTATTACTGAACATCCTCTGGAGTAA 1191 0.4534 MLMSSSCQVHMSFRILQFPCSKLPNMLLFLHLRPNTNSTFFPSSTILCSSLSDDSFSIPKPTQLGYTPPEDPFGLDVELKPSKANSQTQEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCIGKGILTCHQCSGDCVIWEESIDEQPWERARSVSPLKVMEDEEVDNLDIKLDVKKRSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPMLQAQRVAAIKKAKGTVAARQHASKTMKVFFSDPINRQKRSLAMKGVKFYCQTCGREGHRRHYCPELKDSLIVSQFTCSVCGGKGHNRRTCRKLKISHNNGGVTNHHRCKICSQYGHNRRTCPQVVSNKRRDITSRRAYKCRLCQKEGHNIRTCPGSRAITEHPLE* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3831 396 Gene3D - 332 393 - -
Lja3g3831 396 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Lja3g3831 396 SUPERFAMILY Retrovirus zinc finger-like domains 329 387 IPR036875 GO:0003676|GO:0008270
Lja3g3831 396 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Lja3g3831 396 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Lja3g3831 396 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Lja3g3831 396 SMART c2hcfinal6 370 386 IPR001878 GO:0003676|GO:0008270
Lja3g3831 396 Pfam Zinc knuckle 369 385 IPR025829 -
Lja3g3831 396 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 45 388 - -
Lja3g3831 396 Gene3D - 278 331 - -
Lja3g3831 396 SUPERFAMILY Retrovirus zinc finger-like domains 278 324 IPR036875 GO:0003676|GO:0008270
Lja3g3831 396 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 45 388 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3831 7 385 C2H2 Transcription Factor Family AT5G20220 59.091 3.29e-158 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3831 - - gmx:100800156 633.254