Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3824 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGTTTGATCGACGATATTCCCGCCCCTGAGGTCACCTTCACTGTCCCTCCCTCCGGATTCACCTGGCCCTCCTCTCAACCCTTGAATTCCTCTTCCAATGTCGTCGGTGTTGAGATTGATGGCTCATTAGGGGATTCTGACAGTCTCAAAGAGCCTGGTTCGAAGAAGAGGGTCAGATCTGAGTCATGTTCTGCTACTAGCTCCAAAGCATGCCGGGAGAAGTTGCGTCGAGACAAACTTAATGACAAGTTTGTTGAACTGGGCTCCATATTGGAGCCTGGAAGACCTCCCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACTCAGTTAAGGGGTGAAGCCCAGAAGATGAAAGACACTAATATGGGTCTTCAAGAGAAGATTAAAGAGTTAAAGACTGAGAAGAATGAGCTTCGTGATGAGAAGCAGAGGCTCAAGACAGAGAAAGAGAGGTTGGAGCAGCAGCTGAAATCTATGAATGCACAACCTAGTTTCATGCCCCCCCCTCAAGCACTCCCTGCTGCATTCGCTGCACAAGGCCAAGCCCATGGCAACAAGTTAGTGCCATTTATCAGCTATCCAGGAGTTGCCATGTGGCAATTCTTGCCTCCTGCTGCGCGTGATACCTCACAGGATCACGAGCTTCGTCCACCAGTTGCCTAA 717 0.4965 MVSRENTNWLFDYGLIDDIPAPEVTFTVPPSGFTWPSSQPLNSSSNVVGVEIDGSLGDSDSLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMNAQPSFMPPPQALPAAFAAQGQAHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPPVA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3824 238 SMART finulus 83 134 IPR011598 GO:0046983
Lja3g3824 238 CDD bHLH_AtILR3_like 82 157 - -
Lja3g3824 238 MobiDBLite consensus disorder prediction 55 80 - -
Lja3g3824 238 Coils Coil 125 180 - -
Lja3g3824 238 PANTHER TRANSCRIPTION FACTOR ILR3 1 238 - -
Lja3g3824 238 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Lja3g3824 238 PANTHER BHLH TRANSCRIPTION FACTOR 1 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lja3g3824 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Lja3g3824 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 148 IPR036638 GO:0046983
Lja3g3824 238 Gene3D - 80 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3824 Lja-Chr3 75330504 75335707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3824 1 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.917 2.97e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g3824 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3824 - - gmx:100788858 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3824 3 75330504 75335707 Lja3g3824 3 75330504 75335707 ECH