Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3819 ATGGAGTCAAAGAGGTGTATGAACGTGGCGTGTGCCGCCGCGACGTCGGCTCGGTGGCGCAAAGGTTGGGCTCTGCGATCCGGTGAATTCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAATCAACATATTGTGATATGTTTCACTCAAAGGACTCTGGTTGGAGAGAATGCACTTCTTGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCTAAGTCTCAGCTTCAATTGCTAGATGCTGGTGGTGTATGCTGTAAAAACTGCACAAGTAATTCAGGACTTCAACCTATTGCAAGTAATGAAAAGCCTACTGGATCTGGGACATCAAAGGTAAAAAATGTCAGTGCACAACAGTGCACATCTCTGGCTAACCAATTAAATGTGAGGGGTTTGCAATTAGGGCATTATGCAGAGAATGATGGGCTGAGGTGCTGGCTCAAACCTCATAGTGTTGGTACAGAGGAACCTTCTACAGAAATCAAACCAGAAGTACTGCCCTCTGCTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATCGTGACTCTAATGGATCATCTAAGCCTGCCAAAGCAGAGAACTGTAAGGCAGACACAGACATGCAAGATATATATGAATCATTAGCACAGACAAATTTGAGTATGGCGCTTGCTGCTCCTTTAGGAATTTCGAATCCCTTTAATAGTGCTGTTGTTGATGAAAGGGAACTAAGTAAAACATCACCTCCACTTCTATTGGCGTCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCAAACTCTTACCCCAGGCTTAGAAGCAAATGCAGGCATGGTGTCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGGGGAAAGAGTCAGCTGCTTCCGCGTTATTGGCCTCGAATTACAGAACAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGCCGCTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTACAAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCCATGCAACTGCAAGCTGGAGATACTGTAACATTTAGCCGCATGGAACCTGAGGGGAAACTTATAATGGGTTTCAGGAAGGCAAAAACTTCTGCTGTAGTACAGGAAACACTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTACCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACTCACCTAAACGCATTGTCTAAAAGCTGGAACTCAGCTGGTGGTGACATGAATTGGCATAATATTGACATGCCCGAAGGCAGGAAAAGAGATGGGTTGCCTGTACCTCCTGTAATGGTTCCTGAGAAGAAAAGAACTCGCAATATTGGGTCAAAAAGTAAGAGGTTACTTTTTGATAGCCAGGATGCACTGGAGCTGCAACTTACTTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCTCCAACAGTTAAGCCAAGCGTTGTCATGATTGAGGATCATGAGTTTGAAGAATACGACGAACCTCCTGTCTTTGGAAAGAGAAGTATATTTGTAGCACGACCAACTGGGATAAATGAGCAGTGGACACAGTGTGATATTTGCTCAAAATGGCGGAAGCTGCCAGTTGATGTACTTATTCCACCTAAGTGGACATGTGTGGAGAATCAATGGGATCAGAGCAGGTGTTCATGTTCTGCCCCCAATGAATTGAACCCAAGGGAACTGGATAAGCTTCTGAGACAGAACAAGGGTATTACACCATTCCTTGCATTAAATACTGAATTCAAGAAACAGAGACTAGCAGCAAGCCACAGACAAGGCCTAGAACGTGAATCTTCTGGACTGGATGCTTTGGCAAATGCTGCAGTACTTGGGGATGATGCAAGTGACTCTGGCCGGACACCAGTCACTACCACTACAAGACACCCCCGGCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAAGGAAAACACAAACCTACATGCACCTGCAACGTGTGCATGACAGTTAAACGCCGGTTTAAAACCTTGATGATGCGAAAGAAGAAGCGCCAATCTGAGCGTGAAGCAGAGATGGCTCAGAAAAATCAGCTATCTTGGAGGACCAAGGATGAATCAGAGGTAGACAGCACCGTTCAACATTTAACTCCAGTTAACGGTTCAGAGAATGAAACGCGGGTGCCAAATGCGTTGGAATCACGGAGTCAAGACTGCGCGGCTGAAGCTTCCAAGGGGGGGAAATTAGACTTGAATTGCCAACCTGATCGAGAGGACACACAAGCTGGGCCAAACTCAGTGAGCATGATGGGTCTACTTGAAGAAGCAAATCTACCGCTGGAGACATACCTGAAGCAAAACGGTCTTACTAGCTTGATATCAGAGCAGCAAACAAACTCAGCTTCAAATGTGCAGGCACAGACAGCCAACGAGAGTGAGGGAAGAAACAATGAGGATTGCAATACTACTTCTGCAGTTCATGACCAGCAAAGCAGTCCTGAAGAGGACAGTGAGCAAGACAAAGACCAAAACAACTCACTCACATGA 2757 0.4552 MESKRCMNVACAAATSARWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSKDSGWRECTSCGKRLHCGCVASKSQLQLLDAGGVCCKNCTSNSGLQPIASNEKPTGSGTSKVKNVSAQQCTSLANQLNVRGLQLGHYAENDGLRCWLKPHSVGTEEPSTEIKPEVLPSAGELGSTLISQFHRDSNGSSKPAKAENCKADTDMQDIYESLAQTNLSMALAAPLGISNPFNSAVVDERELSKTSPPLLLASRSRHLLPKPPRQTLTPGLEANAGMVSQIRIARPPAEGRGKSQLLPRYWPRITEQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLQIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMEPEGKLIMGFRKAKTSAVVQETLPSNMPNGSHSSETTYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKSWNSAGGDMNWHNIDMPEGRKRDGLPVPPVMVPEKKRTRNIGSKSKRLLFDSQDALELQLTWEEAQDLLRPPPTVKPSVVMIEDHEFEEYDEPPVFGKRSIFVARPTGINEQWTQCDICSKWRKLPVDVLIPPKWTCVENQWDQSRCSCSAPNELNPRELDKLLRQNKGITPFLALNTEFKKQRLAASHRQGLERESSGLDALANAAVLGDDASDSGRTPVTTTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEMAQKNQLSWRTKDESEVDSTVQHLTPVNGSENETRVPNALESRSQDCAAEASKGGKLDLNCQPDREDTQAGPNSVSMMGLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTANESEGRNNEDCNTTSAVHDQQSSPEEDSEQDKDQNNSLT* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3819 918 Pfam CW-type Zinc Finger 592 634 IPR011124 GO:0008270
Lja3g3819 918 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 870 - -
Lja3g3819 918 SUPERFAMILY DNA-binding pseudobarrel domain 319 421 IPR015300 -
Lja3g3819 918 MobiDBLite consensus disorder prediction 751 836 - -
Lja3g3819 918 Gene3D - 590 645 - -
Lja3g3819 918 SMART B3_2 322 422 IPR003340 GO:0003677
Lja3g3819 918 Gene3D - 300 426 IPR015300 -
Lja3g3819 918 ProSiteProfiles B3 DNA-binding domain profile. 322 423 IPR003340 GO:0003677
Lja3g3819 918 MobiDBLite consensus disorder prediction 782 803 - -
Lja3g3819 918 MobiDBLite consensus disorder prediction 865 900 - -
Lja3g3819 918 CDD B3_DNA 320 421 IPR003340 GO:0003677
Lja3g3819 918 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 870 - -
Lja3g3819 918 MobiDBLite consensus disorder prediction 691 710 - -
Lja3g3819 918 ProSiteProfiles Zinc finger CW-type profile. 587 637 IPR011124 GO:0008270
Lja3g3819 918 MobiDBLite consensus disorder prediction 865 918 - -
Lja3g3819 918 Pfam B3 DNA binding domain 322 421 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3819 Lja-Chr3 75274869 75281790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3819 1 898 B3 DNA Binding Superfamily AT4G32010 48.780 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g3819 B3 2.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3819 - - gmx:100778833 1590.86