Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3818 ATGGGGTGTTTTACTATCTTGAAGAGCAAGAAAAAATTGTTTGACCGAATTATTCGGTCAAAACGTGTCAATCATAATGAGCATGGAGCTGCAGTACTGCCTGGATCTCAAACTCAAACCCGATCATTGCAGTCGGCACCTCCTAGTTTTAAGACTAAAGTGAAATCCATTCACCCTCTTAATAAAGTTTTCAACAGCAAGTCGCGGGCTTTATCTGCTCCATCGGCTCTTGATTCTGCAGAACAGAATGCTTTTGCTTCAACTGAGCATGAGGAACATGAAGAGTCAAAACACCGAGTAATACCAGGGAAGGAGCCGCGTTCACCTGGTCCACAACCTTTACCTCTTCCATCTCCTCAGGGTGGTGGAGCATTGAAGGTTATTATCAGCCTTAAGCCAGGGTTGGTTAATGGCCCTCTATATGCTTCTGGAGCTCTTAATTCTGCAGAACAAGATGCTTTGGTCTCAGTTGAGTTTGAGGAACAAGCTGAGTCGAATAACAGAGCTGGAACGATGAAGGAGCAGCGTTCATCTAGTCCACGGCCTTTACCTCTTCCACATCCTAAGGGTGGTGGTGCATTGAAGACTACTCGCAGCTTTAAGCCCGAAAAAGTTAGTGGTCCTTCACATGCTTCTAGACCTGTGCCCCTTCCATCTACCGGGTTGCTTAATTACTTTCGGTATGAGGAAATTGCTGCTGCTTGCCACAATTTTTCTTCAGATCAATGTATCTCAGAATGTCTTTCTGCTAGCATATATAAAGCTTCCTTTCATAACGATGCTTTAAGCCCAAAGAAGTTTGAAGCCACTGTGACCCGTCTTCGCCCACCAACTCTGGGCTTCAGGGAATTCATAACTGAGGTCAGTAATCTTGCATCTTTGCAACATCCAAACCTCTGTAAATTGCTAGGATTTCATGCCCGCGACATATCCGAACCAAAGATGTTGGTTTATGAGAGGCTATGCCATGGGAGCTTGGACAGCTTGTTGTTTGGGAAATCTGATGGCTCTTCAATTGATTGGAACATAAGAATGAAGATTGCCTTATGTGCTGCAAAAGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTCCAGGCAATGTATAATGAATTCTCAACCGCTAATATACAAATTGACAAAGATTTCAGTGCAAAGCTCTCAGAATATGGTTGTGTTGGACATGTTCCTGAAAAAGAGTTTTCAAAGAGTTCATCTGCTGTTGGAAAACTTCCAGTGGAGACATTGGAGAGAGGAATGCTCACTCCAAAGAGCAATGTGTGGAGTTTTGGAATTGTTCTTCTGGAGCTACTTACAGGCAGAAAGAATCTTGATAGCCACTATCCCAAGGAAGAGAGGAACTTAGTCAAGTGGTGCCGGCCTTTCCTGTCAGACGATTTCCGACTCTCGCTGATCATGGATCCTCAACTTAAAGGCCAGTTTCCATCCAAAGCAGCAAGGACAGTAGCTGACATTGCACAGAGATGCCTCCAAAAGGATCCATCAGAGAGACCCACCATGAGAAGCATTGTGGAGCATCTGAAAATGATACAGGACATGAAGTACTCTTGTTGGCACCCACTGCAAGAACCATCAGCTGCTATATCTAAGAAACAAATGTCAAAATCACCAAGTCTTAATGGTGTTTCATATCAGGCACCTGGAATGAGTCTCTCTCTACCACAATCATCCATTGCTGAAACAACTTTCTCACCTCCAAGATGCTGTGCTGTGCCATCCTGCTTCCTCCTCCTCGCTTGCCAGAGGAGCTTTAATATTCAGGATATTAGGAGTTCACCATCCTCAGAATCTAGACAGCTAGTGTTGAAGGATATTATTGTTTTATTTATCTATTATCATTAG 1860 0.4376 MGCFTILKSKKKLFDRIIRSKRVNHNEHGAAVLPGSQTQTRSLQSAPPSFKTKVKSIHPLNKVFNSKSRALSAPSALDSAEQNAFASTEHEEHEESKHRVIPGKEPRSPGPQPLPLPSPQGGGALKVIISLKPGLVNGPLYASGALNSAEQDALVSVEFEEQAESNNRAGTMKEQRSSSPRPLPLPHPKGGGALKTTRSFKPEKVSGPSHASRPVPLPSTGLLNYFRYEEIAAACHNFSSDQCISECLSASIYKASFHNDALSPKKFEATVTRLRPPTLGFREFITEVSNLASLQHPNLCKLLGFHARDISEPKMLVYERLCHGSLDSLLFGKSDGSSIDWNIRMKIALCAAKGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSEYGCVGHVPEKEFSKSSSAVGKLPVETLERGMLTPKSNVWSFGIVLLELLTGRKNLDSHYPKEERNLVKWCRPFLSDDFRLSLIMDPQLKGQFPSKAARTVADIAQRCLQKDPSERPTMRSIVEHLKMIQDMKYSCWHPLQEPSAAISKKQMSKSPSLNGVSYQAPGMSLSLPQSSIAETTFSPPRCCAVPSCFLLLACQRSFNIQDIRSSPSSESRQLVLKDIIVLFIYYH* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3818 619 PANTHER OS01G0588500 PROTEIN-RELATED 45 141 - -
Lja3g3818 619 Pfam Protein tyrosine and serine/threonine kinase 282 513 IPR001245 GO:0004672|GO:0006468
Lja3g3818 619 MobiDBLite consensus disorder prediction 74 121 - -
Lja3g3818 619 MobiDBLite consensus disorder prediction 31 51 - -
Lja3g3818 619 Gene3D Phosphorylase Kinase; domain 1 208 319 - -
Lja3g3818 619 MobiDBLite consensus disorder prediction 85 104 - -
Lja3g3818 619 ProSiteProfiles Protein kinase domain profile. 238 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3818 619 SUPERFAMILY Protein kinase-like (PK-like) 215 525 IPR011009 -
Lja3g3818 619 MobiDBLite consensus disorder prediction 28 52 - -
Lja3g3818 619 PANTHER OS01G0588500 PROTEIN-RELATED 142 607 - -
Lja3g3818 619 MobiDBLite consensus disorder prediction 159 213 - -
Lja3g3818 619 Gene3D Transferase(Phosphotransferase) domain 1 321 525 - -
Lja3g3818 619 PANTHER OS01G0822200 PROTEIN 45 141 - -
Lja3g3818 619 MobiDBLite consensus disorder prediction 160 178 - -
Lja3g3818 619 PANTHER OS01G0822200 PROTEIN 142 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3818 Lja-Chr3 75268883 75271547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3818 217 517 Receptor kinase-like Gene Family AT4G02010 35.831 3.49e-53 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Lja3g3818 PK_Tyr_Ser-Thr 3.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3818 - - lja:Lj0g3v0318359.1 1194.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3258 1 40177658 40181827 Lja3g3818 3 75268883 75271547 PCT