Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3808 ATGGCGATTTCCCCAACGTTCCCAACCAGAAAACGACCAACCCGAACGTCGTCGTTTCACTCTTCCAACCTTGCCGACTTAAGCCTCCTCCACTCTCTCCTCCACCTCACCGACCAGATATGTTCCACCGCCACCGCCGCAACCAACTTCCTCCTCAGCCGCACTTCCTCCTCCACCGTCCGCAAAACGCACCTCCTCGGCGTCGTTTTCGAAGACCTCCTCCGCGTTTCATCTTCATCTTCTCCAACCTCAAGCTCCCTCCTCCTCTGCCTCGAGGAAATGTACATCGTGCTTCACAGAATCAAAACGCTCATCGAAGATTGCTCAAATCAAAGCAAATTCTCATTCCTCATGCAAATCGAAACCGTCGCTGATAGCTTCCACAAGCTCACCGGAGAGTTATCCACTCTTCTCGATATCTTCCCTCTGCAAGAACTCGTCGACCTCAACGACGACGTTCGAGAACTCGTTCTCCTCATCAGACGGCAGTGCTCCGAATCCAAACCGGTTCTCGGAGCGGAACAATCAGAGCTCCGGAACGACGTCGTTTCAATCCTCAACGGAATTAAGAGCGAGATTGTTCCTGATCAAGCACAATTAGCCTCAATCTTCGAGAAATTGGAGATTCGCGATTCTTCTACTTGTAGATCAGAGATTGAGAGCCTGCAACGAGAGATTCACAATCGGAGCGAGGAAGAACAACAACAACAATCGAGATCAGAAATCGTCGCGTTGATCGGACTTGTTCGTTACGCCAAGTGCGTTCTCTTCGGCGCGTCGACGCCGCCGCGAAGTGAGTGTCTACGGCGGAAGGAATCCTCATCGGAGTTATCAGTGCCGGCGGATTACCGGTGCCCGATAAGCTTAGAACTGATGCGTGACCCTGTCGTCGTGGCAACTGGACAGACGTACGATCGGGTTTCCATCAAGCTCTGGATGGATGCAGGACACAACACGTGTCCCAAGACAGGTCAGATCCTGGCCCACACTGACCTCATCCCAAACCATGCGCTGCGGAACATGATAGCGTTATGGTGCCGCGAGCAGAGGATCCCGTTCGACGCGGAAACCGTTACAGGGAAAATCAACGGTGGCGTAACAAACAAAACCGCCTTAGAAGCCACCAAAATGATGTCAACGTTTTTAGTCAACAAACTCAACGTTTCGGATTTGGATGAATCAAACGCCGTCGTTTACGAGCTTCGGGTTCTGGCGAAAACAGACTCGGATAGCCGAGCCTGCATTGCCGAAGCTGGAGCGATTCCGGTTCTGGTTCGGTATCTCACCACCGGTTCGCACCACCCGAGCCTCCAGGTGAACGCGGTGACCACGATTCTCAATCTCTCGATACTGGAAGCGAACAAGACGAGGATCATGGAGACTGACGGCGCGTTGAACGGCGTCGCGGAGGTGCTGCGGTCTGGTGCCACGTGGGAGGCCAAGGCGAACGCGGCGGCGACGGTGTTCAGCTTGACTGGGGTCCCGGTTTACAGGAAGAAGCTCGGGAGGAAGATGCGTGTGCTGAGCGGGTTGGTCGAGCTTGCCAAGTGTGGGCCTGAGGGGGCTAGGAGGGACGCTTTGGCGGCGATTCTGAATCTCGCGGCGGACCGCGAGACGGTGGGGAGATTGGTGGAGGGCGGGGCGGTGGAGGTTGCGGCGGAGGTTATGGCGGTGATGCCGGAGGAGGCGGTGACGATTCTTGAGGCGGTGGTGAAGCGTGGTGGGTTGATGGCGGTGGCGGCGGCTTATGTGGGGATTAAGAAGTTGGGGAATGTGTTGAGGGATGGGTCGGAGAGAGCGAGGGAGAGTGCGGCGGCGACGCTTGTTACGATGTGTAGGAAGGGTGGGTCGGAGATTGTGGCGGAGCTGGCGGCGATTCCTGGAGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGGAGTGTTAGAGGGAGGAGGAAGGCGGCGACACTGTTGCGGATACTAAGGAGGTGGGCGGCGGGGTTAGAGAGTGAAGAATTGTCAACTACCACGTTTGTCAATTCCTCAACTACTACTGTGGTTGTTCCAACTACCACAGTGGCAAACAATTGA 2073 0.5548 MAISPTFPTRKRPTRTSSFHSSNLADLSLLHSLLHLTDQICSTATAATNFLLSRTSSSTVRKTHLLGVVFEDLLRVSSSSSPTSSSLLLCLEEMYIVLHRIKTLIEDCSNQSKFSFLMQIETVADSFHKLTGELSTLLDIFPLQELVDLNDDVRELVLLIRRQCSESKPVLGAEQSELRNDVVSILNGIKSEIVPDQAQLASIFEKLEIRDSSTCRSEIESLQREIHNRSEEEQQQQSRSEIVALIGLVRYAKCVLFGASTPPRSECLRRKESSSELSVPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMDAGHNTCPKTGQILAHTDLIPNHALRNMIALWCREQRIPFDAETVTGKINGGVTNKTALEATKMMSTFLVNKLNVSDLDESNAVVYELRVLAKTDSDSRACIAEAGAIPVLVRYLTTGSHHPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEAKANAAATVFSLTGVPVYRKKLGRKMRVLSGLVELAKCGPEGARRDALAAILNLAADRETVGRLVEGGAVEVAAEVMAVMPEEAVTILEAVVKRGGLMAVAAAYVGIKKLGNVLRDGSERARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLESEELSTTTFVNSSTTTVVVPTTTVANN* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3808 690 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lja3g3808 690 SUPERFAMILY ARM repeat 381 655 IPR016024 -
Lja3g3808 690 Pfam Armadillo/beta-catenin-like repeat 409 449 IPR000225 GO:0005515
Lja3g3808 690 Gene3D - 24 144 IPR036537 GO:0007166
Lja3g3808 690 Coils Coil 219 239 - -
Lja3g3808 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 463 IPR000225 GO:0005515
Lja3g3808 690 SMART arm_5 408 450 IPR000225 GO:0005515
Lja3g3808 690 SMART arm_5 572 613 IPR000225 GO:0005515
Lja3g3808 690 SMART arm_5 495 535 IPR000225 GO:0005515
Lja3g3808 690 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lja3g3808 690 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 14 673 - -
Lja3g3808 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 355 IPR013083 -
Lja3g3808 690 Pfam U-box domain 279 350 IPR003613 GO:0004842|GO:0016567
Lja3g3808 690 PANTHER U BOX DOMAIN-CONTAINING 14 673 - -
Lja3g3808 690 SUPERFAMILY RING/U-box 269 352 - -
Lja3g3808 690 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lja3g3808 690 Gene3D - 363 583 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3808 Lja-Chr3 75030823 75033333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3808 4 686 U-box Gene Family AT5G01830 55.912 0.0 711