Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3795 ATGGCGGTGCCTAGATGTTTCTTGGTGACAATTCTGCAGTGGTGTTTTTTGGCTTGCTTACTTTGCTTGTCTCTGGCTCTTAACAATCAAAGCCAATTGTGTAATCCACAGGATTTAACAGCCCTGAAGGAGTTTGCAGGAAATCTTACAAGAGGCTCTATCATCAGAACATGGTCCAATGATGTTGTGTGCTGCAACTGGGTTGGAGTTGTCTGTGATAATGTGACTGGTGCTAGTAGAGTGACCAAGTTGATCCTTCCTGAAATGGGTCTCAATGGGACAATTTCACCTTCTTTAGCACAGCTAGATCAGCTCAATGTGCTGAATCTTTCATTCAACAGTCTTGGAGGTGGGTTGCCTGCAGAATTATCCAAGTTGGAGCAGTTGAAATTCCTTGATGTGAGCCATAACATGCTGTCAGGACCTGTTGCTGGAGCACTTTCTGGTTTGAAATCCATTGAAGTGTTGAATGTTTCTAGTAACACATTTTCTGGAGACCTCTTCAGCCTTGGGGAATTGGAATTCCCACATCTCCTTGCCTTCAACATGAGTAACAATTCATTCACTGGAGGATTCAGTTCTCAGCTTTGCAGTTCTTCCAAGGATCTTCACACCCTTGATTTATCTGCAAATCATTTTGGTGGTGGTCTTGAAGGCTTGGACAACTGCACCACCACATCTCTCCAACTGTTGCACTTGGATTCCAATTCATTCTCTGGGGTTCTTCCAGATTCATTGTATTCAATGTCATCCTTGGAGCAATTCTCAGTCTCTGCAAACAACCTATCTGGCCAGTTAAGTAAGCAACTGAGTAAGCTCTCCAGTTTAAAATCTCTTGTGGTTTCTGAGAACAGGTTTTCAGGGGAACTCCCAAATGTTTTTGATAACCTTTTGCACATAGAACAATTAGTTGCACATGCCAATTCATTTTCTGGACCATTACCTTCCACCTTGGCTTTGTGCTCTAAACTTAGAGTGCTTGATCTTCGAAACAATTCCTTGACAGGTTCTATTGATCTTAATTTCACTGGGCTACCTAATCTTTCCACACTGGATCTTGCTAGTAATCACTTCATTGGAAGCCTTCCTAGTTCTTTGTCCTTTTCTCATGAACTGAAAGTTTTAAGCCTTGCTAGGAATCGTTTAACTGGTTCTGTCCCTGAAAACTATGCCAATCTGAGTTCAGTTTTGTTTGTATCCCTGTCAAACAACAGCATAGAGAACTTATCTGGTGCACTGTCTGTTTTTCAACAATGCAAAAATCTCACCACTCTTATCCTCACTAGGAATTTCCATGGTGAGGAGATTCCAGGAAGTGTAACAGTAGGGTTTGAGAGTCTCATGGTTTTAGCACTTGGGAATTGTGGTCTTAGAGGCCATATTCCTTCGTGGCTATCGAAATGCAGGAAGTTGTCGGTCCTTGATCTATCTTGGAACCATTTGAATGGTAGCATTCCTTCTTGGATCGGTCAGATGGATAGCTTGTTCTACTTGGATTTCTCGAATAACACTCTCACTGGAGAAATACCGAAAAGTTTGACAGAGTTGAAGGGCCTCTTGTGTCCGAATTGTAGCAGATTAAATCTCCCTGCTTATGGAGCAAATCCTCTCTTTGTTAAGAGAAACACCAGTGCTAGTGGGCTGCAATATAAGCAGGCCTCAAGTTTCCCTCCTTCCATTTACTTGAGCAATAACATGCTGAGTGGAAATATATGGCCTGATATTGGTCTATTGAAAGCACTGCTTGTTTTGGATTTAAGCAGGAACAACATCACCGGCTCCGTTCCCAGCACTATTTCAGGGATGGAGAATTTGGAAACTTTAGATTTATCTTATAATGATCTCTCTGGAGCGATCCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGCGTGGCATATAATCATTTAGAAGGACCAATTCCAACCGGGGGGCAATTTTTAAGCTTCCCTAGTTCCAGCTTTGAGGGGAATCCCGGGCTTTGTGGGGAAATTGATTCTCCTTGCAAATATGTTGACAGTATGATGCCCCATATTCCTTCTGGTTCGTCCAGAAAACTCAGAAGAAGCAATGTCCTCGGCATAACGATTGGTGTAGGAGTAGGGCTTGCACTGCTTCTTGCATTTATTCTGCTAAGAATTTCAAAGAAGGATGATGATAAGCCTATTGATAACTTTGATGAGGAGTTCAGTGGTAGGCCACATAGGTTATCTGAAGCACTTGTTTCCTCGAAATTGGTCCTTTTCCAGAATTCAGATTGCAAGGATCTCACTGTTGCGGATTTGTTAAGATCCACAAACAATTTCAACCAGGCTAATATTGTCGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCAAATCTTCCAAACGGCACAAAAGCAGCTATCAAGAGACTCTCTGGGGACTGTGGGCAGATGGAACGCGAATTCCATGCTGAGGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGCTATTGTCGGCATGGGAACGACAGGTTGCTAATTTACTCGTACTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTGGATGCAAATTCGGCTCTAAAATGGGATGTGAGGCTCAAGATTGCTCAAGGTGCAGCTCATGGATTAGCTTACTTGCACAAGGGGTGTGAACCATACATAGTGCATCGCGATGTTAAGTCGAGCAACATTCTTCTGGATGACAAGTATGAAGCTCATTTGGCTGATTTTGGCCTCTCAAGGCTAATTCAACCTTATGCTACTCATGTCACAACAGACTTGGTAGGAACTCTTGGATACATTCCTCCAGAATATAGTCAGACACTGACAGCAACGTTCCGGGGCGATGTTTACAGTTTCGGCGTTGTTCTGCTTGAGCTTCTTACTGGTAGAAGGCCTGTGGAAGTGATCAAGGGGAAGAATTGCAGGAATCTGGTGTCTTGGGTTTTTCAGATGAAATCTGAGAATAGGGAGCAGGAGATCTTTGATCCAGCCATTTGGGAGAAGGATCGTGAGAAGCAACTGTTGGAGATGCTTGCAATTGCTTGTAAATGTCTTCATCAAGATCCAAGGCAGAGACCCTCTATTGAAGTAGTTGTTTCCTGGCTTGATGATGTAAAATTTGATGGTTGTCAACAGTGA 3159 0.4305 MAVPRCFLVTILQWCFLACLLCLSLALNNQSQLCNPQDLTALKEFAGNLTRGSIIRTWSNDVVCCNWVGVVCDNVTGASRVTKLILPEMGLNGTISPSLAQLDQLNVLNLSFNSLGGGLPAELSKLEQLKFLDVSHNMLSGPVAGALSGLKSIEVLNVSSNTFSGDLFSLGELEFPHLLAFNMSNNSFTGGFSSQLCSSSKDLHTLDLSANHFGGGLEGLDNCTTTSLQLLHLDSNSFSGVLPDSLYSMSSLEQFSVSANNLSGQLSKQLSKLSSLKSLVVSENRFSGELPNVFDNLLHIEQLVAHANSFSGPLPSTLALCSKLRVLDLRNNSLTGSIDLNFTGLPNLSTLDLASNHFIGSLPSSLSFSHELKVLSLARNRLTGSVPENYANLSSVLFVSLSNNSIENLSGALSVFQQCKNLTTLILTRNFHGEEIPGSVTVGFESLMVLALGNCGLRGHIPSWLSKCRKLSVLDLSWNHLNGSIPSWIGQMDSLFYLDFSNNTLTGEIPKSLTELKGLLCPNCSRLNLPAYGANPLFVKRNTSASGLQYKQASSFPPSIYLSNNMLSGNIWPDIGLLKALLVLDLSRNNITGSVPSTISGMENLETLDLSYNDLSGAIPPSFNNLTFLSKFSVAYNHLEGPIPTGGQFLSFPSSSFEGNPGLCGEIDSPCKYVDSMMPHIPSGSSRKLRRSNVLGITIGVGVGLALLLAFILLRISKKDDDKPIDNFDEEFSGRPHRLSEALVSSKLVLFQNSDCKDLTVADLLRSTNNFNQANIVGCGGFGLVYKANLPNGTKAAIKRLSGDCGQMEREFHAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDANSALKWDVRLKIAQGAAHGLAYLHKGCEPYIVHRDVKSSNILLDDKYEAHLADFGLSRLIQPYATHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENREQEIFDPAIWEKDREKQLLEMLAIACKCLHQDPRQRPSIEVVVSWLDDVKFDGCQQ* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3795 1052 PANTHER PHYTOSULFOKINE RECEPTOR 2 443 510 - -
Lja3g3795 1052 PANTHER PHYTOSULFOKINE RECEPTOR 2 561 618 - -
Lja3g3795 1052 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 163 - -
Lja3g3795 1052 PANTHER PHYTOSULFOKINE RECEPTOR 2 282 436 - -
Lja3g3795 1052 SMART LRR_typ_2 602 625 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 126 149 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 225 248 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 468 492 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 393 418 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 578 601 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 345 369 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 273 296 IPR003591 -
Lja3g3795 1052 SMART LRR_typ_2 102 125 IPR003591 -
Lja3g3795 1052 SUPERFAMILY Protein kinase-like (PK-like) 753 1042 IPR011009 -
Lja3g3795 1052 Pfam Leucine rich repeat 582 639 IPR001611 GO:0005515
Lja3g3795 1052 PRINTS Leucine-rich repeat signature 602 615 - -
Lja3g3795 1052 PRINTS Leucine-rich repeat signature 581 594 - -
Lja3g3795 1052 PANTHER PHYTOSULFOKINE RECEPTOR 2 615 1045 - -
Lja3g3795 1052 PANTHER PHYTOSULFOKINE RECEPTOR 2 176 283 - -
Lja3g3795 1052 SMART serkin_6 771 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3795 1052 Pfam Protein kinase domain 772 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3795 1052 Gene3D Ribonuclease Inhibitor 370 676 IPR032675 -
Lja3g3795 1052 Gene3D Ribonuclease Inhibitor 261 369 IPR032675 -
Lja3g3795 1052 SUPERFAMILY L domain-like 558 671 - -
Lja3g3795 1052 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Lja3g3795 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Lja3g3795 1052 SUPERFAMILY RNI-like 226 529 - -
Lja3g3795 1052 SUPERFAMILY RNI-like 61 310 - -
Lja3g3795 1052 CDD STKc_IRAK 777 1043 - -
Lja3g3795 1052 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 561 618 - -
Lja3g3795 1052 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 176 283 - -
Lja3g3795 1052 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 436 - -
Lja3g3795 1052 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 163 - -
Lja3g3795 1052 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 615 1045 - -
Lja3g3795 1052 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524
Lja3g3795 1052 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 443 510 - -
Lja3g3795 1052 ProSiteProfiles Protein kinase domain profile. 771 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3795 1052 Gene3D Ribonuclease Inhibitor 32 260 IPR032675 -
Lja3g3795 1052 Gene3D Phosphorylase Kinase; domain 1 736 846 - -
Lja3g3795 1052 Pfam Leucine Rich repeats (2 copies) 323 363 IPR025875 -
Lja3g3795 1052 Gene3D Transferase(Phosphotransferase) domain 1 847 1049 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3795 Lja-Chr3 74793011 74797779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3795 65 1048 Receptor kinase-like Gene Family AT1G55610 33.607 3.75e-160 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja3g3795 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3795 - - lja:Lj0g3v0220169.1 1848.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3795 3 74793011 74797779 Lja3g3795 3 74793011 74797779 ECH
Lja3g3795 3 74793011 74797779 Lja3g2382 3 29046239 29050653 PCT