Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3785 ATGACAGATTCTGAAATGGATAGACAGAGGCAAGGCTATTTTCATCCTGAACCGTGTATCCTTTTGAGGGCCGGCGTTACCACCGTTGCACAGCCTAACATCCGCCCAGTGTTGGCAGCTACAGGGAACACAGCTAATGTTGATCCTCACTATTTACCAGATGTTTATGACAATGGTAGGGTGTATGGGATTGCCCAGTACAATGGCGGTCAGCCTCCACATAATCTCGATATGGGTGTTGCAGCTCCGGCACACTTATATTATTCTGGGATGAATCCTTCTTCTAGTGCTGGTGTATTTCCTATGCCTTTAAACCACAGAGCCGATCAGTTGCCAGGTTCAAGCACATTTGCAGTCCCTGGAGTGTCCTCGGATAATTTCGGAAGGAGCACTGGTGTCGTTGATGATGTCAGAGGTCCGTACAAAAGGAAAAGCGCTGAAGCAATTCGGGGGAATTACCAGTATTTTAATCCTTCGGCCGGTCCTTCAACTGCTCCCCCTAATCCAAGACACACTGATGGGGTTACTATGATGGATACTGCATCATTTTCATTCCCCATTCCTTCACCTATTATGATGCATGACCATAACCATTTGATTCACGGAAACTATTTGGGGCAGCACTTTCATCAAGCTGCTCCTCCCTGGTTGGACCAGCAGTTGAATAGTAATAACAATGATGGTCACACTACAGCCTGGAACCAGTCTCTTCCAGTACATTATATGCAAGCATCCAGTGTGAATGGAAGTTCATTAGAGAGTGCAAGCATGGGTTTGCAGAGATATCATGATACAGCTGGCAACAGAAATAGCATCAGGTTTCCTCATCCTCCTCCTGTCAATCAACAGTTCCATAGTTATCATCATCCAGCACTGCCCATGCCAGGAGTAAGAGGACACACTATCAACTTTCACCCTCCGGTAACTGCAGCTGCATTTAGAGTTCCAGCAAATCCTTCACGCGGTGCTGCGATCCCACCACAACCTGGTTTTGAATTAGTTCCTAGGCATGTTGGTCCAGCACCACCAGCAGGTTTCCGGATTTACCGACCTCAAAGAGGAGTGATGCATGAAACAACTCTTGGACATCGAACTCATCCTCCTGTGGGCTTCCTCCAAGTTGATGGTGTTGCTCTAATTGATGAAGTGGGAAATTTGGTTGACCATCATAGAGATATGCGCTTGGACATAGAGGACATGTCTTATGAGGATCTTCTTGCATTGGGAGAGCGGATTGGTAATGTCAGCACTGGTTTATCAGAGGAAGCAATTTCAAATCAATTGAAGACAAAAACTTATCTGGCGCATGCTACTTCTGTTAATGAGGAGGAGGCAGCTTCTAATGACCAGGAAACCGATTCTTGTATGATATGTCAGGATGAGTTTAAGAACCAAGAGGAGATTGGAATTCTTCGATGCGAGCATGAGTATCATGCAGAATGCTTGAGGAAATGGTTGCTTGTGAAAAATGTCTGCCCAATCTGCAAATCAGAAGCTTTGACTCCTGGAGGGGGGGATGTGTAG 1524 0.46 MTDSEMDRQRQGYFHPEPCILLRAGVTTVAQPNIRPVLAATGNTANVDPHYLPDVYDNGRVYGIAQYNGGQPPHNLDMGVAAPAHLYYSGMNPSSSAGVFPMPLNHRADQLPGSSTFAVPGVSSDNFGRSTGVVDDVRGPYKRKSAEAIRGNYQYFNPSAGPSTAPPNPRHTDGVTMMDTASFSFPIPSPIMMHDHNHLIHGNYLGQHFHQAAPPWLDQQLNSNNNDGHTTAWNQSLPVHYMQASSVNGSSLESASMGLQRYHDTAGNRNSIRFPHPPPVNQQFHSYHHPALPMPGVRGHTINFHPPVTAAAFRVPANPSRGAAIPPQPGFELVPRHVGPAPPAGFRIYRPQRGVMHETTLGHRTHPPVGFLQVDGVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEEAISNQLKTKTYLAHATSVNEEEAASNDQETDSCMICQDEFKNQEEIGILRCEHEYHAECLRKWLLVKNVCPICKSEALTPGGGDV* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3785 507 Pfam Ring finger domain 453 496 IPR001841 -
Lja3g3785 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 500 IPR013083 -
Lja3g3785 507 SUPERFAMILY RING/U-box 449 500 - -
Lja3g3785 507 ProSiteProfiles Zinc finger RING-type profile. 455 496 IPR001841 -
Lja3g3785 507 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 504 IPR045191 GO:0061630
Lja3g3785 507 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 126 504 - -
Lja3g3785 507 SMART ring_2 455 495 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3785 Lja-Chr3 74571953 74575536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3785 388 500 C3H Transcription Factor Family AT2G15530 49.558 9.87e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3785 K19041 - gmx:100800642 660.988