Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3774 ATGGCTCCAAGGGACAGAGCCACCGCACACTCCGCCGCAACACCCCACAACGCCGCCGCTAAGGAGATCCGTTACCGCGGCGTCAGGAAGCGCCCATGGGGACGTTATGCCGCCGAGATCCGTGACCCGGGGAAGAAAACACGCGTCTGGCTTGGGACCTTTGACACCGCGGAGGAAGCGGCGAAGGCTTACGACACGGCGGCGCGTGAGTTTCGTGGTGCTAAGGCTAAGACGAATTTCCCCACCGCGTCTGAGCTTGTGAACAGCATCACCACACGGAGCAGCCCTAGCCACAGCAGCACGCTCGAGTCTTCCTCCCCTCCGCCGCAACCGTCGCCGCTGGACCTCACGCTTACACCCCCGCTCTCCACCGGCGCGTTCCAAGTTGCGCGTCCTGTGATGTTTTTCGACGCGTTTGCTCGTCCGGAGACCATGCTGAGCATCGGTCGGCGTGAGATGTGCGGGTTTGATCTCCCGGTGGCTGATTTTAGACTCGCCACCGCTGCCGCCGCCGCGCACAGTGACTCTGATTCTTCCTCCGTCGTGGACTACGAGCGTGTCCTGCGTGAGAGACTCTTGGATCTTGACCTCAACGTCCCTCCTCCGCCGGAGGTTGCTTGA 621 0.6264 MAPRDRATAHSAATPHNAAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAAKAYDTAAREFRGAKAKTNFPTASELVNSITTRSSPSHSSTLESSSPPPQPSPLDLTLTPPLSTGAFQVARPVMFFDAFARPETMLSIGRREMCGFDLPVADFRLATAAAAAHSDSDSSSVVDYERVLRERLLDLDLNVPPPPEVA* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3774 206 MobiDBLite consensus disorder prediction 85 119 - -
Lja3g3774 206 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g3774 206 MobiDBLite consensus disorder prediction 85 105 - -
Lja3g3774 206 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Lja3g3774 206 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Lja3g3774 206 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Lja3g3774 206 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Lja3g3774 206 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Lja3g3774 206 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Lja3g3774 206 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Lja3g3774 206 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Lja3g3774 206 PANTHER ERF FAMILY PROTEIN 1 119 - -
Lja3g3774 206 PANTHER ERF FAMILY PROTEIN 129 187 - -
Lja3g3774 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 119 - -
Lja3g3774 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 129 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3774 Lja-Chr3 74422847 74424109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3774 16 152 AP2-EREBP Transcription Factor Family AT3G15210 57.237 2.69e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g3774 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3774 K09286 - gmx:100813652 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3774 3 74422847 74424109 Lja3g4845 3 90486692 90487297 ECH
Lja3g1228 3 12919513 12920795 Lja3g3774 3 74422847 74424109 ECH
Lja3g3774 3 74422847 74424109 Lja6g3028 6 59067794 59069988 ECH
Lja3g3774 3 74422847 74424109 Lja3g3774 3 74422847 74424109 ECH