Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3773 ATGGACAGCTACTACCCTCTCCACCACCACTTGGACATGAACAGAGACTCACATTTGCCTCCTGGCTTTAGATTCCACCCAACTGATGAAGAACTCATCACTTACTACCTTCTCAAGAAGGTTCTTGACAGCACCTTCACTGGCAGAGCCATAGCTGAAGTTGATCTTAACAAGTGTGAGCCATGGGAGCTTCCTGAGAAAGCTAAGATGGGTGAGAAGGAGTGGTACTTTTTCAGCTTAAGAGACAGGAAGTACCCAACTGGGCTAAGAACCAATAGGGCAACAGAAGCTGGTTACTGGAAAGCCACTGGGAAAGACAGAGAGATTTACAGTTCCAAAACTTGCTCCCTTGTTGGCATGAAGAAAACCCTTGTTTTCTACAGAGGAAGAGCTCCAAAAGGAGAGAAGAGCAACTGGGTCATGCATGAGTATCGTCTTGAAGGCAAATTTGCCTACCACTACCTCTCTAGGAATTCTAAGGATGAGTGGGTCATTTCTCGTGTGTTTCAAAAGAACAGCATCGGTGGCGGCAACGGAAGCATCACCACCGTGTCTTCCACCACCTCCAACGGTTCCAAGAAGACAAGAATGAACATGAACATGAGCAACACCTCTGCAAGCAACAGCATGAGTCTCTGCCCTGAACCAAGTTCTCCCTCTTCGGTTTATCTTCCACCGCTTCTAGACTCTTCACCTTACCACCCCAACAACACCACCGTGATCTTTGATAACAACACCACCCAAAGGGAGCACGTGTCCTGTTTCTCCACAATTTCTGCGGCCACTGCCGCTGTTGTCTCCAACAACAACAACACCTTCAACAGCAATGCTAGCTTTGACCTTGTTCCTCCTCAACCACTGATTAATTCAGACCCTTTTGCTCGGTTTCAGAGAAACAGCCAGCTGCCTTTCTTCTTCTCACAGGCGGCGCAGCCATTTCACGGTGACTTTCTTGGTTGGCCGGTGACGGAGGAGCAGAAAGTGCAGGCTGAGAGTGGTTCTACTTCTACTGGCATGGCATTAGGATCCACCGAGCTTGATTGCATGTGGGGCTATTAA 1059 0.4844 MDSYYPLHHHLDMNRDSHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKNSIGGGNGSITTVSSTTSNGSKKTRMNMNMSNTSASNSMSLCPEPSSPSSVYLPPLLDSSPYHPNNTTVIFDNNTTQREHVSCFSTISAATAAVVSNNNNTFNSNASFDLVPPQPLINSDPFARFQRNSQLPFFFSQAAQPFHGDFLGWPVTEEQKVQAESGSTSTGMALGSTELDCMWGY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3773 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 312 - -
Lja3g3773 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 14 312 - -
Lja3g3773 352 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
Lja3g3773 352 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Lja3g3773 352 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Lja3g3773 352 SUPERFAMILY NAC domain 15 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3773 Lja-Chr3 74404715 74406604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3773 8 296 NAC Transcription Factor Family AT5G53950 59.076 5.17e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g3773 NAM 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3773 - - cam:101501114 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3773 3 74404715 74406604 Lja3g3773 3 74404715 74406604 ECH